Publications

2020

1. Andersen KH: Size-based theory for fisheries advice. To appear in ICES Journal of Marine Science

2. Brander K, Kiørboe T (2020) Decreasing phytoplankton size adversely affects ocean food chains. Global Change Biology, in press, doi.org/10.1111/gcb.15216
3. Cadier M, Hansen AN, Andersen KH, Visser AW (2020) Competition between vacuolated and mixotrophic unicellular plankton. Journal of Plankton Research 42(4): 425-439, doi.org/10.1093/plankt/fbaa025
4. Chakraborty S, Cadier M, Visser A, Bruggeman J, Andersen KH (2020) Latitudinal variation in plankton traits and ecosystem function.Global Biogeochemical Cycles 34(8), doi.org/10.1029/2020GB006564
5. Färber L, van Gemert R, Langangen Ø, Durant JM, Andersen KH (2020) Population variability under stressors is dependent on body mass growth and asymptotic body size. Royal Society Open Science 7(2), doi.org/10.1098/rsos.192011
6. Gompper G, Winkler RG, Speck T, Solon A, Nardini C, Peruani F, Löwen H, Golestanian R, Kaupp UB, Alvarez L, Kiørboe T, Lauga E, Poon WCK, DeSimone A, Muiños-Landin S, Fischer A, Söker NA, Cichos F, Kapral R, Gaspard P, Ripoll M, Sagues F, Doostmohammadi A, Yeomans JM, Aranson IS, Bechinger C, Stark H, Hemelrijk CK,  Nedelec FJ, Sarkar T, Aryaksama T, Lacroix M, Duclos G, Yashunsky V, Silberzan P, Arroyo M, Kale S (2020) The 2020 Motile Active Matter Roadmap. J Physics: Condensed Matter. 32: 193001,doi.org/10.1088/1361-648X/ab6348

7. Grønning J, Kiørboe T (2020) Diatom defence: Grazer induction and cost of shell-thickening. Funct Ecol 34(9) 1790-1801, doi.org/10.1111/1365-2435.13635

8. Ho P-C, Chang C-W, Shiah F-K, Wang P-L, Hsieh C-H, Andersen KH (2020) Body size, light intensity and nutrient supply determine plankton stoichiometry in mixotrophic plankton food webs. American Naturalist 195(4) E100-E110, doi.org/10.1086/707394

9. Kiørboe T, Thomas M (2020) Heterotrophic eukaryotes show a slow-fast continuum, not a gleaner-exploiter trade-off. PNAS 117(40), doi.org/10.1073/pnas.2008370117

10. Maureaud A, Andersen KH, Zhang L, Lindegren M (2020) Trait-based food web model reveals the underlying mechanisms of biodiversity-ecosystem functioning relationships. Journal of Animal Ecology, doi.org/10.1111/1365-2656.13207

11. Nielsen JH, Pedersen CV, Kiørboe T, Nikolajsen T, Brydegaard M, Rodrigo PJ (2020) Dual-band fluorosensor for discriminating non-eating from algae-eating zooplankton in aquatic environments. OSA Continuum: 3(7): 1730-1738, doi.org/10.1364/OSAC.389089
12. Pecuchet L, Lindegren M, Kortsch S, Całkiewicz J, Jurgensone I, Margonski P, Otto S, Putnis I, Strāķe S, Nordström MC (2019) Spatio-temporal dynamics of multi-trophic communities reveal ecosystem-wide functional reorganization. Ecography 43(2): 197-208, doi.org/10.1111/ecog.04643
13. Pomati F, Shurin JB, Andersen KH, Tellenbach C, Barton AD (2020) Interacting temperature, nutrients and zooplankton grazing control phytoplankton size-abundance relationships in eight Swiss lakes. Frontiers in Microbiology, doi.org/10.3389/fmicb.2019.03155
14. Rijnsdorp AD, Hiddink JG, van Denderen PD, Hintzen NT, Eigaard OR, Valanko S, Bastardie F, Bolam SG, Boulcott P, Egekvist J, Garcia C, van Hoey G, Jonsson P, Laffargue P, Nielsen JR, Piet GJ, Sköld M, van Kooten T (2020) Different bottom trawl fisheries have a differential impact on the status of the North Sea seafloor habitats. ICES Journal of Marine Science, fsaa050
15. Svetlichny L, Larsen PS, Kiørboe T (2020) Kinematic and dynamic scaling of copepod swimming. Fluids 5: 68; doi.org/10.3390/fluids5020068
16. van Denderen PD, Bolam SG, Friedland R, Hiddink JG, Norén K, Rijnsdorp AD, Sköld M, Törnroos A, Virtanen EA, Valanko S (2020) Evaluating impacts of bottom trawling and hypoxia on benthic communities at the local, habitat, and regional scale using a modelling approach. ICES Journal of Marine Science 77: 278–289
17. van Denderen PD, Gislason H, Heuvel Jvd, Andersen KH: Global analysis of fish growth rates shows weaker responses to temperature than metabolic predictions. To appear in Global Ecology and Biogeography

2019

1. Andersen A, Dölger J (2019) Planktonic encounter rates with non-spherical encounter zones. Journal of The Royal Society Interface 16 (156), doi.org/10.1098/rsif.2019.0398

2. Andersen KH (2019): Monograph: Fish Ecology, Evolution, and Exploitation - a new theoretical synthesis. Princeton University Press.

3. Andersen KH, Jacobsen NS, van Denderen PD (2019): Limited impact of big fish mothers for population replenishment. Canadian Journal of Fisheries and Aquatic Sciences, doi:10.1139/cjfas-2018-0354

4. Asadzadeh SS, Nielsen LT, Andersen A, Dölger J, Kiørboe T, Larsen PS, Walther JH (2019) Hydrodynamic functionality of the lorica in choanoflagellates. J Roy Soc Interface 16: 20180478. doi.org/10.1098/rsif.2018.0478

5. Baktoft H, Gjelland KØ, Okland F, Rehage JS, Corujo RS, Viadero N, Thygesen UH (2019) Opening the black box of high resolution fish tracking using yaps bioRxiv. Doi: https://doi.org/10.1101/2019.12.16.877688

6. Beukhof, E, Dencker, TS, Palomares MLD, Maureaud A (2019) A trait collection of marine fish species from North Atlantic and Northeast Pacific continental shelf seas. (Dataset) PANGAEA, doi.org/10.1594/PANGAEA.900866

7. Beukhof E, Dencker TS, Pecuchet L, Lindegren M (2019) Spatio-temporal variation in marine fish traits reveals community-wide responses to environmental change. Marine Ecology Progress Series 610: 205-222, DOI: 10.3354/meps12826

8. Beukhof E, Frelat R, Pecuchet L, Maureaud A, Dencker TS, Sólmundsson J, Punzón A, Primicerio R, Hidalgo M, Möllmann C, Lindegren M (2019) Marine fish traits follow fast-slow continuum across oceans. Sci Rep9 17878 doi:10.1038/s41598-019-53998-2

9. Brun P, Stamieszkin K, Visser AW, Licandro P, Payne MR, Kiørboe T (2019) Climate change has altered zooplankton-fuelled carbon export in the North Atlantic. Nature Ecology & Evolution, doi :10.1038/s41559-018-0780-3

10. Cadier M, Andersen KH, Visser AW, Kiørboe T (2019) Competition-defense trade-off increases the diversity of microbial plankton communities and dampens trophic cascades. Oikos doi:10.1111/oik.06101

11. Chakraborty S, Pančić M, Andersen KH, Kiørboe T (2019) The cost of toxin production in phytoplankton: the case of PST producing dinoflagellates: The ISME Journal 13: 64-75 (DOI: 10.1038/s41396-018-0250-6)

12. Dölger J, Kiørboe T, Andersen A (2019) Dense Dwarfs versus Gelatinous Giants: The Trade-Offs and Physiological Limits Determining the Body Plan of Planktonic Filter Feeders. American Naturalist 194, (2): E30-E40. doi.org/10.1086/703656

13. Fontana S, Thomas MK, Reyes M, Pomati F (2019) Light limitation increases multidimensional trait evenness in phytoplankton populations. The ISME Journal, doi: 10.1038/s41396-018-0320-9

14. Hansen AN, Visser AW (2019) The seasonal succession of optimal diatom traits. Limnology and Oceanography, doi: 10.1002/lno.11126

15. Henseler C, Nordström MC, Törnroos A, Snickars M, Pecuchet L, Lindegren M, Bonsdorff E (2019) Coastal habitats and their importance for the diversity of benthic communities: A species- and trait-based approach, Estuarine, Coastal and Shelf Science, 226, doi.org/10.1016/j.ecss.2019.106272

16. Ho Pei-Chi, Chang Chun-Wei, Shiah Fuh-Kwo, Wang Pei-Ling, Hsieh Chih-hao, Andersen KH (2019) Body size, light intensity, and nutrient supply determine plankton stoichiometry in mixotrophic plankton food webs. The American Naturalist, doi: 10.1086/707394.

17. Holm MW, Rodriguez-Torres R, Hansen BW, Almeda R (2019) Influence of behavioral plasticity and foraging strategy on starvation tolerance of planktonic copepods. Journal of Experimental Marine Biology and Ecology 511: 19-27

18. Horne, C, Hirst A, Almeda R, Atkinson D, Kiørboe T (2019) Rapid shifts in the thermal sensitivity of growth but not development rate causes temperature-size response variability during ontogeny in arthropods. Oikos 10.1111/oik.06016

19. Jutfelt F, Roche DG, Clark TD, Norin T, Binning SA, Speers-Roesch B, Amcoff M, Morgan R, Andreassen AH, Sundin J (2019) Brain cooling marginally increases acute upper thermal tolerance in Atlantic cod. Journal of Experimental Biology 222, jeb208249, doi: 10.1242/jeb.208249.

20. Kiørboe T, Andersen KH (2019) Nutrient affinity, half saturation constants, and the cost of toxin production in dinoflagellates. Ecol Lett doi:10.1111/ele.13208

21. Kragesteen TJ, Simonsen K, Visser AW, Andersen KH (2019) Optimal salmon lice treatment threshold and tragedy of the commons in salmon farm networks. Aquaculture 512, 734329. doi.org/10.1016/j.aquaculture.2019.734329

22. Kristensen ML, Pedersen MW, Thygesen UH, Del Villar-Guerra D, Baktoft H, Aarestrup K (2019) Migration routes and habitat use of a highly adaptable salmonid (sea trout, Salmo trutta) in a complex marine area. Animal Biotelemetry 7, pages: 23

23. Lindegren M, Thomas MK, Jónasdóttir SH, Nielsen TG, Munk P (2019) Environmental niche separation promotes coexistence among ecologically similar zooplankton species – North Sea copepods as a case study, Limnology and Oceanography. doi.org/10.1002/lno.11322

24. Mariani P, Quincoces I, Haugholt KH, Chardard Y, Visser AW, Yates C, Piccinno G, Reali G, Risholm P, Thielemann JT (2019) Range-Gated Imaging System for Underwater Monitoring in Ocean Environment. Sustainability 11, 1: 1-13. 162; doi:10.3390/su11010162

25. Maureaud A, Hodapp D, van Denderen P, Hillebrand H, Gislason H, Spaanheden Dencker T, Beukhof E, Lindegren M (2019) Biodiversity–ecosystem functioning relationships in fish communities: biomass is related to evenness and the environment, not to species richness. Proceedings of the Royal Society B: Biological Sciences 286 (1906) doi: 10.1098/rspb.2019.1189

26. McLean M, Mouillot D, Lindegren M, Villeger S, Engelhard G, Murgier J, Auber A (2019) Fish communities diverge in species but converge in traits over three decades of warming. Global Change Biology, doi.org/10.1111/gcb.14785

27. Neubauer P, Andersen KH (2019) Thermal performance of fish is explained by an interplay between physiology, behaviour, and ecology. Conservation Physiology 7 (1) doi.org/10.1093/conphys/coz025

28. Nielsen JH, Pedersen C, Kiørboe T, Nikolajsen M, Brydegaard M, Rodrigo PJ (2019) Investigation of autofluorescence in zooplankton for use in classification of larval salmon lice. Applied optics 286:7022-7027. Doi.org/10.1364/AO.58.007022  

29. Norin T, Metcalfe NB (2019) Ecological and evolutionary consequences of metabolic rate plasticity in response to environmental change. Phil. Trans. R. Soc. B 374, 20180180, 9 p., doi: 10.1098/rstb.2018.0180

30. Norin T, Canada P, Bailey JA, Gamperl AK (2019) Thermal biology and swimming performance of Atlantic cod (Gadus morhua) and haddock (Melanogrammus aeglefinus). PeerJ 7:e7784, doi: 10.7717/peerj.7784.

31. Pančić M, Torres RR, Almeda R, Kiørboe T (2019) Silicified cell walls as a defensive trait in diatoms. Proc. R. Soc. B 286: 20190184. doi.org/10.1098/rspb.2019.0184

32. Petrik CM, Stock CA, Andersen KH, van Denderen PD, Watson JR (2019) Bottom-up drivers of global patterns of demersal, forage, and pelagic fishes. Progress in Oceanography 176, 102124, doi.org/10.1016/j.pocean.2019.102124

33. Pinti J, Kiørboe T, Thygesen U, Visser A (2019) Trophic interactions drive the emergence of diel vertical migration patterns: a game-theoretic model of copepod communities. Proceedings of the Royal Society B: Biological Sciences, DOI: 10.1098/rspb.2019.1645

34. du Pontavice H, Gascuel D, Reygondeau G, Maureaud A, Cheung WWL (2019) Climate change undermines the global functioning of marine food webs. Global Change Biology doi: 10.1111/gcb.14944

35. Prowe AEF, Visser AW, Andersen KH, Chiba S, Kiørboe T (2019) Biogeography of zooplankton feeding strategy. Limnol Oceanogr. DOI: 10.1002/lno.11067

36. Rist S, Baun A, Almeda R, Hartmann NB (2019) Ingestion and effects of micro- and nanoplastics in blue mussel (Mytilus edulis) larvae. Marine Pollution Bulletin 140: 423-430, doi: 10.1016/j.marpolbul.2019.01.069

37. Serra-Pompei C, Hagstrom GI, Visser AW, Andersen KH (2019) Resource limitation determines temperature response of unicellular plankton communities. Journal of Limnology and Oceanography, DOI: 10.1002/lno.11140

38. Sguotti C, Otto SA, Frelat R, Langbehn TJ, Ryberg MP, Lindegren M, Durant JM, Stenseth NC, Möllmann C (2019) Catastrophic dynamics limit Atlantic cod recovery. Proc. R. Soc. B 286: 20182877. dx.doi.org/10.1098/rspb.2018.2877

39. Someren Gréve Hv, Kiørboe T, Almeda R (2019) Bottom-up behaviorally mediated trophic cascades in plankton food webs. Proc Roy Soc B. 201 81664. dx.doi.org/10.1098/rspb.2018.1664

40. Svendsen MBS, Johansen JL, Bushnell PG, Skov PV, Norin T, Domenici P, Steffensen JF, Abe A (2019) Are all bony fishes oxygen regulators? Evidence for oxygen regulation in a putative oxygen conformer, the swamp eel Synbranchus marmoratus. J. Fish Biol. 94: 178-182, doi: 10.1111/jfb.13861

41. Thambithurai D, Crespel A, Norin T, Rácz A, Lindström J, Parsons K, Killen SS (2019) Hypoxia alters vulnerability to capture and the potential for trait-based selection in a scaled-down trawl fishery. Conservation Physiology, coz082, doi: 10.1093/conphys/coz082.

42. Tunca S, Lindegren M, Ravn-Jonsen L, Lindroos M (2019) Cooperative Fisheries Outperform Non-cooperative Ones in the Baltic Sea Under Different Climate Scenarios. Frontiers in Marine Science. 6:622. doi.org/10.3389/fmars.2019.00622

2018

1. Almeda R, van Someren Gréve H, Kiørboe T (2018) Prey perception mechanism determines maximum clearance rates of planktonic copepods. Limnol Oceanogr, doi: 10.1002/lno.10969

2. Amato A, Sabatino V, Nylund G, Bergkvist J, Basu S, Anderson M,Sanges R, Godhe A, Kiørboe T, Selander E, Ferrante MI (2018) Grazer-induced transcriptomic and metabolomic response of the chain-forming diatom Skeletonema marinoi. ISME Journal, doi.org/10.1038/s41396-018-0094-0

3. Andersen KH, Marty L, Arlinghaus R (2018) Evolution of boldness and life-history in response to selective harvesting. Canadian Journal of Fisheries and Aquatic Sciences 75(2): 271-281,doi:10.1139/cjfas-2016-0350

4. Cornwell LE, Findlay HS, Lewis C, Fileman ES, Smyth TJ, Hirst AG, Bruun JT, McEvoy AJ, Widdicombe CE, Castellani C, Atkinson A (2018) Seasonality of Oithona similis and Calanus helgolandicus reproduction and abundance: contrasting responses to environmental variation at a shelf site. Journal of Plankton Research doi:10.1093/plankt/fby007

5. van Denderen PD, Lindegren M, MacKenzie BR, Watson R, Andersen KH. (2018) Global patterns in marine predatory fish. Nature Ecology & Evolution 2, 65-70, DOI: 10.1038/s41559-017-0388-z

6. van Gemert R, Andersen KH (2018) Implications of late-in-life density-dependent growth for fishery size-at-entry leading to maximum sustainable yield. ICES Journal of Marine Science 75(4): 1296-1305

7. van Gemert R, Andersen KH (2018) Challenges to fisheries advice and management due to stock recovery, ICES Journal of Marine Science 75(6) 1864-1870, doi.org/10.1093/icesjms/fsy084

8. Glaser M, Ferse SC, Neil M, Plass-Johnson J, Satari D, Teichberg M, Reuter H (2018) Breaking resilience for a sustainable future: Thoughts for the anthropocene. Frontiers in Marine Science DOI: 10.3389/fmars.2018.00034

9. Heilmann IT, Thygesen UH, Sørensen MP (2018) Spatio-temporal pattern formation in predator-prey systems with fitness taxis. Ecological Complexity 34: 44-57, doi: 10.1016/j.ecocom.2018.04.003

10. Holm MW, Kiørboe T, Brun P, Licandro P, Almeda R, Hansen BW (2018) Resting eggs in free living marine and estuarine copepods. J Plankton Res 40(1): 2-15, doi.org/10.1093/plankt/fbx062

11. Holm MW, Rodriguez Torres R, Hansen BW, Almeda R (2018) Sex-specific starvation tolerance of copepods with different foraging strategies. Journal of Plankton Research 40(3): 284-294 

12. Horne CR, Hirst AG, Atkinson D (2018) Insect temperature-body size trends common to laboratory, latitudinal and seasonal gradients are not found across altitudes. Functional Ecology 32(4): 948-957

13. Jaspers C, Marty L, Kiørboe T (2018) Selection for life-history traits to maximize population growth in an invasive species.  Global Change Biology 24:1164-1174, doi: 10.1111/gcb.13955

14. Kenitz KM, Visser AW, Ohman MD, Landry MR, Andersen KH (2018): Community trait distribution across environmental gradients. Ecosystems, doi:10.1007/s10021-018-0314-5

15. Kenitz KM, Visser AW, Andersen KH (2018) Response to comment ‘What drives plankton seasonality in a stratifying shelf sea? Some competing and complementary theories’. Limnol. Oceanogr. 63, 2885-2886, doi: 10.1002/lno.11034

16. Kiørboe T, Saiz E, Tiselius P, Andersen KH (2018) Adaptive Feeding behavior and functional responses in zooplankton. Limnol Oceanogr 63: 308-321, doi: 10.1002/lno.10632

17. Kiørboe T, Visser AW, Andersen KH (2018) A trait-based approach to ocean ecology. ICES J Mar Sci, doi:10.1093/icesjms/fsy090

18. Kragesteen TJ, Simonsen K, Visser AW, Andersen KH (2018) Identifying Salmon Lice Transmission Characteristics between Faroese Salmon Farms. Aquaculture Environment Interactions 10: 49-60, DOI: 10.3354/aei00252

19. Lindegren M, Brander K (2018) Adapting Fisheries and Their Management To Climate Change: A Review of Concepts, Tools, Frameworks, and Current Progress Toward Implementation. Reviews in Fisheries Science & Aquaculture. DOI: 10.1080/23308249.2018.1445980

20. Lindegren M, Checkley Jr DM, Koslow JA, Goericke R, Ohman MD (2018) Climate-mediated changes in marine ecosystem regulation during El Niño. Glob Change Biol. 24:796–809. doi.org/10.1111/gcb.13993

21. Lindegren M, Holt BG, MacKenzie BR, Rahbek C (2018) A global mismatch in the protection of multiple marine biodiversity components and ecosystem services. Nature Scientific Reports 8: 4099

22. Lindemann C, Visser A, Mariani P (2018) Correction to 'Dynamics of phytoplankton blooms in turbulent vortex cells'. Journal of the Royal Society, Interface, 15 (138)

23. Lundholm N, Krock B, John U, Skov J, Cheng J, Pančić M, Wohlrab S, Rigby K, Nielsen TG, Selander E, and Harðardóttir S (2018) Induction of domoic acid-production in diatoms - types of grazers and diatoms are important. Harmful Algae doi: 10.1016/j.hal.2018.06.005

24. Maud JL, Hirst AG, Atkinson A, Lindeque PH, McEvoy AJ (2018) Mortality of Calanus helgolandicus: sources, differences between the sexes and consumptive and non-consumptive processes. Limnol Oceanogr DOI: 10.1002/lno.10805

25. McLean M, Mouillot D, Lindegren M, Engelhard G, Villéger S, Marchal P, Brind’Amour A, Auber A (2018). A climate-driven functional inversion of connected marine ecosystems. Current Biology 28: 3654-3660

26. Miesner AK, Payne MR (2018) Oceanographic variability shapes the spawning distribution of blue whiting (Micromesistius poutassou). Fisheries Oceanography, 27(6), 623-638, doi.org/10.1111/fog.12382

27. Olsson K, Andersen KH (2018) Cannibalism as a selective force on offspring size in fish. Oikos 127(9): 1264-1271, doi: 10.1111/oik.04131

28. Pančić M, Kiørboe T (2018) Phytoplankton defence mechanisms: traits and trade-offs. Biological Reviews 93(2): 1269-1303, doi: 10.1111/brv.12395

29. Pecuchet L, Reygondeau G, Cheung WWL, Licandro P, van Denderen PD, Payne M, Lindegren M (2018) Spatial distribution of life-history traits and their response to environmental gradients across multiple marine taxa. Ecosphere 9(10), doi: 10.1002/ecs2.2460

30. Pinti J, Visser AW (2018) Predator-Prey Games in Multiple Habitats Reveal Mixed Strategies in Diel Vertical Migration. The American Naturalist 2019, doi.org/10.1086/701041

31. Plass-Johnson JG, Bednarz VN, Hill JM, Jompa J, Ferse SCA, Teichberg MC (2018) Contrasting responses in the niches of two coral reef herbivores along a gradient of habitat disturbance in the Spermonde Archipelago, Indonesia. Frontiers in Marine Science DOI: 10.3389/fmars.2018.00032

32. Plass-Johnson JG, Ferse SC, Bednarz VN, Gärdes A, Heiden JP, Lukman M, Miñarro S, Schwieder H, Weiand L, Wild C, Reuter H, Teichberg M (2018) Spatio-temporal patterns in the coral reef communities of the Spermonde Archipelago, 2012-2014, II: Fish assemblages display structured variation related to benthic condition. Frontiers in Marine Science DOI: 10.3389/fmars.2018.00036

33. Rijnsdorp AD, Bolam SG, Garcia C, Hiddink JG, Hintzen NT, van Denderen PD, van Kooten T (2018) Estimating sensitivity of seabed habitats to disturbance by bottom trawling based on the longevity of benthic fauna. Ecological Applications 28(5): 1302-1312, DOI: 10.1002/eap.1731

34. Riley EE, Das D, Lauga E (2018). Swimming of peritrichous bacteria is enabled by an elastohydrodynamic instability. Sci. Rep. 8: 10728, DOi:10.1038/s41598-018-28319-8

35. Simó R, Saló V, Almeda R, Movilla J, Trepat I, Saiz E, Calbet A (2018) The quantitative role of microzooplankton grazing in dimethylsulfide (DMS) production in the NW Mediterranean. Biogeochemistry 141(2): 125-142. doi: 10.1007/s10533-018-0506-2

36. Schnedler-Meyer NA, Kiørboe T, Mariani P (2018) Boom and bust: Life history, environmental noise, and the (un)predictability of jellyfish blooms. Frontiers in Marine Science DOI: 10.3389/fmars.2018.00257

37. Schnedler-Meyer NA, Pigolotti S, Mariani P (2018) Evolution of complex asexual reproductive strategies in jellyfish. The American Naturalist 192(1): 72-80

38. Su Y, Lenau TA, Gundersen E, Kirkensgaard JJK, Maibohm C, Pinti J, Ellegaard M (2018) The UV filtering potential of drop-casted layers of frustules of three diatom species.. Scientific reports, 8 (1), pp. 959

39. Svetlichny L, Larsen PS, Kiørboe T (2018) Swim and fly. Escape strategy in neustonic and planktonic copepods. J Exp Biol, doi:10.1242/jeb.167262

40. Teichberg M, Ferse SC, Bednarz VN, Gärdes A, Heiden JP, Lukman M, Miñarro S, Schwieder H, Weiand L, Wild C, Reuter H, Plass-Johnson JG (2018) Spatio-temporal patterns in coral reef communities of the Spermonde Archipelago, 2012-2014, I: Comprehensive reef monitoring reveals two indices that reflect changes in reef health. Frontiers in Marine Science DOI: 10.3389/fmars.2018.00033

41. Thomas MK, Fontana S, Reyes M, Pomati F (2018) Quantifying cell densities and biovolumes of phytoplankton communities and functional groups using scanning flow cytometry, machine learning and unsupervised clustering. PLoS one 13(5), e0196225

42. Thomas MK, Fontana S, Reyes M, Kehoe M, Pomati F (2018) The predictability of a lake phytoplankton community, over time-scales of hours to years. Ecology Letters 21(5): 619-628

43. Thygesen UH, Patterson, TA (2018) Oceanic diel vertical migrations arising from a predator-prey game. Theoretical Ecology, pages: 1-13, doi: 10.1007/s12080-018-0385-0

44. Törnroos A, Pecuchet L, Olsson J, Gårdmark A, Blomqvist M, Lindegren M, Bonsdorff E (2018) Four decades of functional community change reveals gradual trends and low interlinkage across trophic groups in a large marine ecosystem. Global Change Biology. doi.org/10.1111/gcb.14552

45. Xu J, Kiørboe T (2018) Toxic dinoflagellates produce true grazer deterrents. Ecology, DOI: 10.1002/ecy.2479

46. Xu J, Nielsen LT, Kiørboe T (2018) Foraging response and acclimation of ambush feeding and feeding-current feeding copepods to toxic dinoflagellates. Limnol Oceanogr 63: 1449-1461.doi: 10.1002/lno.10782

2017

1. Almeda R, van Someren Gréve H, Kiørboe T (2017) Behavior is a major determinant of predation risk in zooplankton. Ecosphere 8(2):e01668. 10.1002/ecs2.1668

2. Monograph: Andersen KH (2017) Fish and Fisheries - the size- and trait-based approach. Doctoral Thesis, Technical University of Denmark. 

3. Commentary: Andersen KH, Gislason H (2017) Unplanned ecological engineering. PNAS 114(4): 634-635. doi:10.1073/pnas.1620158114.

4. Baktoft H, Gjelland KØ, Økland F, Thygesen UH (2017). Positioning of aquatic animals based on time-of-arrival and random walk models using YAPS (Yet Another Positioning Solver). Scientific Reports 7(1), dx.doi.org/10.1038/s41598-017-14278-z

5. Berge T, Chakraborty S, Hansen PJ, Andersen KH (2017): Modelling succession of key resource harvesting traits of mixotrophic plankton populations. The ISME Journal11: 212–223doi:10.1038/ismej.2016.92.

6. Brun P, Payne MR, Kiørboe T (2017) A trait database for marine copepods. Earth Syst Sci Data 9: 99–113, doi:10.5194/essd-9-99-2017

7. Chakraborty S, Nielsen LT, Andersen KH (2017) Trophic strategies of unicellular plankton. American Naturalist189(4) E77-E90. doi:10.1086/690764.

8. Chakraborty S, Tiwari P, Sasmal S, Biswas S, Bhattacharya S, Chattopadhyay J (2017) Interactive effects of prey refuge and additional food for predator in a diffusive predator-prey system. Applied Mathematical Modelling 47: 128-140.

9. Chakraborty S, Tiwari P, Sasmal S, Misra AK, Chattopadhyay J (2017) Effects of fertilizers used in agricultural fields on algal blooms. The European Physical Journal Special Topics 226(9): 2119-2133.

10. Dencker TS, Pecuchet L, Beukhof E, Richardson K, Payne MR, Lindegren M (2017) Temporal and spatial differences between taxonomic and trait biodiversity in a large marine ecosystem: causes and consequences. PLoS One doi: 10.1371/journal.pone.0189731

11. Dias JP, Fotedar S, Muenoz J, Hewitt MJ, Lukehurst S, Hourston M, Wellington C, Duggan R, Bridgwood S, Massam M, Aitken V, Lestang, P de, McKirdy S, Willan R, Kirkendale L, Giannetta J, Corsini-Foka M, Pothoven S, Gower F, Viard F, Buschbaum C, Scarcella G, Strafella P, Bishop MJ, Sullivan T, Buttino I, Madduppa H, Huhn M, Zabin CJ, Bacela-Spychalska K, Wójcik-Fudalewska D, Markert A, Maximov A, Kautsky L, Jaspers C, Kotta J, Pärnoja M, Robledo D, Tsiamis K, Küpper FC, Žuljevi A, McDonald JI, Snow M (2017) Establishment of a taxonomic and molecular reference collection to support the identification of species regulated by the Western Australian Prevention List for Introduced Marine Pests. Management of Biological Invasions 8 (2): 215-225. DOI: 10.3391/mbi.2017.8.2.09

12. Dölger J, Bohr T, Andersen A (2017) An analytical model of flagellate hydrodynamics. Physica Scripta 92: 044003 (9pp). doi.org/10.1088/1402-4896/aa6164

13. Dölger J, Nielsen LT, Kiørboe T, Andersen A (2017) Swimming and feeding of mixotrophic biflagellates. Sci. Rep. 7:39892. DOI: 10.1038/srep39892

14. Frelat R, Lindegren M, Dencker TS, Floeter J, Fock HO, Squotti C, Stäbler M, Otto SA, Möllmann C. (2017) Community ecologi in 3D: Tensor decomposition reveals spatio-temporal dynamics of large ecological communities. PLoS ONE 12(11): e0188205. doi.org/10.1371/journal.pone.0188205

15. Giakoumi S, Scianna C, Plass-Johnson JG, Micheli F, Grorud-Colvert K, Thiriet P, Claudet J, Di Carlo G, Di Franco A, Gaines SD, Garcia-Charton J, Lubchenco J, Reimer J, Sala E, Guidetti P (2017) Ecological effects of full and partial protection in the crowded Mediterranean Sea: a regional meta-analysis. Scientific Reports, 7: 8940

16. Griffiths, J. R., Kadin, M., Nascimento, F. J. A., Tamelander, T., Törnroos, A., Bonaglia, S., Bonsdorff, E., Brüchert, V., Gårdmark, A., Järnström, M., Kotta, J., Lindegren, M., Nordström, M. C., Norkko, A., Olsson, J., Weigel, B., Žydelis, R., Blenckner, T., Niiranen, S. and Winder, M. (2017), The importance of benthic–pelagic coupling for marine ecosystem functioning in a changing world. Glob Change Biol, 23: 2179–2196. doi:10.1111/gcb.13642

17. Hirst AG, Lilley MKS, Glazier DS, Atkinson D (2017) Ontogenetic body-mass scaling of nitrogen excretion relates to body surface area in diverse pelagic invertebrates. Limnology & Oceanography 62: 311-319 doi: 10.1002/lno.10396

18. Horne CR, Hirst AG*, Atkinson D (2017) Seasonal body size reductions with warming co-vary with major body size gradients in arthropod species. Proceedings of the Royal Society B DOI:10.1098/rspb.2017.0238 (*Communicating author when not first)

19. Jacobsen NS, Burgess M, Andersen KH (2017) Efficiency of fisheries is increasing at the ecosystem level. Fish and Fisheries18(2) 199-211. doi:10.1111/faf.12171.

20. Kegler HF, Lukman M, Teichberg M, Plass-Johnson J, Hassenrück C, Wild C, Gärdes A (2017) Bacterial Community Composition and Potential Driving Factors in Different Reef Habitats of the Spermonde Archipelago , Indonesia. Frontiers in Microbiology 8: 1–14.

21. Kenitz K, Visser AW, Mariani P, Andersen KH (2017) Seasonal succession in zooplankton feeding traits reveals trophic trait cascade. Limnology and Oceanography 62(3) 1184-1197 doi:10.1002/lno.10494.

22. Mariani P, Andersen KH, Lindegren M, MacKenzie BR (2017) Trophic impact of Atlantic bluefin tuna migrations in the North Sea. ICES Journal of Marine Science 74 (6): 1552-1560. doi:10.1093/icesjms/fsx027.

23. Nielsen LT, Asadzadeh SS, Dölger J, Walther JH, Kiørboe T, Andersen A (2017) Hydrodynamics of microbial filter-feeding. PNAS 114 (35): 9373–9378, doi: 10.1073/pnas.1708873114

24. Patursson EJ, Simonsen K, Visser AW, Patursson Ø. (2017). The effect of exposure on salmon lice (Lepeophtheirus salmonis) population dynamics in Faroese salmon farms. Aquaculture Environment Interactions 9: 33–43. doi: 10.3354/aei00209

25. Payne MR, Hobday AJ, MacKenzie BR, Tommasi D, Dempsey DP, Fässler SMM, Haynie AC, Ji R, Liu G, Lynch PD, Matei D, Miesner AK, Mills KE, Strand KO, Villarino E (2017) Lessons from the first generation of marine ecological forecast products. Front Mar Sci 4

26. Pecuchet L, Lindegren M, Hidalgo M, Delgado M, Esteban A, Fock HO, Gil de Sola L, Punzon A, Solmundsson J, Payne MR. 2017. From traits to life history strategies: deconstructing fish community composition across European Seas. Global ecology and biogeography. 2017;00:1–11.

27. Someren Gréve H van, Almeda R, Lindegren M, Kiørboe T (2017) Gender- specific feeding rates in planktonic copepods with different feeding behavior. J Plankton Res 39: 631-64

28. Someren Gréve H van, Almeda R, Kiørboe T (2017) Motile behavior and predation risk in planktonic copepods. Limnol Oceanogr. 62: 1810–1824. doi: 10.1002/lno.10535

29. Thygesen UH, Albertsen CM, Berg CW, Kristensen K, Nielsen A (2017). Validation of ecological state space models using the Laplace approximation. Environmental and Ecological Statistics 24(2):317-339, dx.doi.org/10.1007/s10651-017-0372-4

30. Traving SJ, Rowe O, Jakobsen NM, Sørensen H, Dinasquet J, Stedmon CA, Andersson A, Riemann L (2017) The effect of increased loads of dissolved organic matter on estuarine microbial composition and function. Frontiers in Microbiology 8 (351), doi.org/10.3389/fmicb.2017.00351

31. Visser AW, Grønning J, Jónasdóttir SH. (2017). Calanus hyperboreus and the lipid pump. Limnology and Oceanography. doi: 10.1002/lno.10492

32. Vu M, Hansen BW, Kiørboe T (2017) The constraints of high density production of the calanoid copepod Acartia tonsa Dana. J Plankton Res, doi.org/10.1093/plankt/fbx056

33. Welti N, Striebel M, Ulseth AJ, Cross WF, DeVilbiss S, Glibert PM, Guo L, Hirst AG, Hood J, Kominoski JS, MacNeill KL, Mehring AS, Welter JR, Hillebrand H (2017) Bridging ecosystem metabolism, food web interactions, and biogeochemistry using the common language of Ecological Stoichiometry. Frontiers in Microbiology 8, doi: 10.3389/fmicb.2017.01298

34. Xu J, Hansen PJ, Nielsen LT, Krock B, Tillmann U, Kiørboe T (2017) Distinctly different behavioral responses of a copepod, Temora longicornis, to different strains of toxic dino­flagellates, Alexandrium spp. Harmful Algae 62: 1-9 doi:10.1016/j.hal.2016.11.020

35. Zhang L, Takahashi D, Hartvig M, Andersen KH (2017): Food-web dynamics under climate change. Proc. Roy. Soc. B. 284: 20171772.

2016

1. Albertsen CM, Nielsen A, Thygesen UH (2016) Choosing the observational likelihood in state-space stock assessment model. Canadian Journal of Fisheries and Aquatic Sciences DOI: dx.doi.org/10.1139/cjfas-2015-0532
2. Almeda R, Harvey TE, Connelly TL, Caca S, Buskey E (2016) Influence of UVB radiation on the lethal and sublethal toxicity of dispersed crude oil to planktonic copepod nauplii. Chemosphere 152: 446-458.
3. * Andersen KH, Berge T, Gonçalves RJ, Hartvig M, Heuschele J, Hylander S, Jacobsen NS, Lindemann C, Martens EA, Neuheimer AB, Olsson K, Palacz A, Prowe F, Sainmont J, Traving SJ, Visser AW, Wadhwa N, Kiørboe T (2016) Characteristic Sizes of Life in the Oceans, from Bacteria to Whales. Annu. Rev. Mar. Sci. 2016. 8: 217–241. doi: 10.1146/annurev-marine-122414-034144
4. * Andersen KH, Blanchard JL, Fulton EA, Gislason H, Jacobsen NS, van Kooten T (2016) Assumptions behind size-based ecosystem models are realistic. ICES Journal of Marine Science: Journal du Conseil, 73(6):1651-1655. doi: 10.1093/icesjms/fsv211.
5. * Andersen KH, Jacobsen NS, Farnsworth KD (2016) The theoretical foundations for size spectrum models of fish communities. Canadian Journal of Fisheries and Aquatic Science 73(4): 575-588 doi:10.1139/cjfas-2015-0230.
6. * Andersen KH, Jacobsen NS, Jansen T, Beyer JE (2016) When in life does density dependence occur in fish populations? Accepted for publication in Fish and Fisheries.
7. * Berge T, Chakraborty S, Hansen PJ, Andersen KH (2016) Modelling succession of key resource harvesting traits of mixotrophic plankton populations. The ISME Journal doi: 10.1038/ismej.2016.92.
8. * Berge T, Hansen PJ (2016) Role of the tertiary plastid of the predatory dinoflagellate Karlodinium armiger. Marine Ecology Progress Series 549: 41–54
9. Bondoc KG, Heuschele J, Gillard J, Vyverman W, Pohnert G. (2016) Selective silicate-directed motility in diatoms. Nature communications 7: 10540.
10. * Brun P, Kiørboe T, Licandro P, Payne MR (2016) The Predictive Skill of Species Distribution Models for Plankton in a Changing Climate. Global Change Biology, 22: 3170–
    3181, doi: 10.1111/gcb.13274
11. * Brun P, Payne M, Kiørboe T (2016) Trait biogeography of marine copepods – an analysis across scales. Ecol Lett, doi: 10.1111/ele.12688
12. * Burgess MG, Diekert FK, Jacobsen NS, Andersen KH, Gaines SD (2016) Remaining questions in the case for balanced harvesting. Fish and Fisheries 17 (4): 1216-1226. doi: 10.1111/faf.12123
13. * Hansen AN, Visser AW (2016) Carbon export by vertically migrating zooplankton: an adaptive behavior model. Limnology and Oceanography. doi: 10.1002/lno.10249
14. * Hansen PJ, Ojamäe K, Berge T, Trampe E, Nielsen LT, Lips I, Kühl M (2016) Photoregulation in the kleptochloroplastidic dinoflagellate Dinophysis acuta. Frontiers in Microbiology 7: 785.
15. * Heilmann IT, Starke J, Andersen KH, Thygesen UH, Sørensen MP (2016) Dynamics of a physiologically structured population in a time-varying environment. Ecological Complexity 28:54-61, DOI: dx.doi.org/10.1016/j.ecocom.2016.10.004
16. Heuschele J, Nemming L, Tolstrup L, Kiørboe T, Nylund GM, Selander E (2016) The sex specific metabolomics footprint of Oithona davisae, J Sea Res 117: 1-6. dx.doi.org/10.1016/j.seares.2016.09.004
17. *Hirst AG, Lilley MKS, Glazier DS, Atkinson D (2016) Ontogenetic body-mass scaling of nitrogen excretion relates to body surface area in diverse pelagic invertebrates. Limnology & Oceanography doi: 10.1002/lno.10396
18. * Horne CR, Hirst AG, Atkinson D, Neves A, Kiørboe T (2016) A global synthesis of seasonal temperature-size responses in copepods. Global Ecol Biogeography, 25, 988–999. DOI: 10.1111/geb.12460 (Featured on the front cover)
19. * Jacobsen NS, Burgess M, Andersen KH (2016) Efficiency of fisheries is increasing at the ecosystem level. Fish and Fisheries doi:10.1111/faf.12171.
20. Jansen T, Kristensen K, Kainge PI, Durholtz D, Strømme T, Thygesen UH, Wilhelm MR, Kathena J, Fairweather TP, Paulus S, Degel H, Lipinski MR, Beyer J (2016) Migration, distribution and population (stock) structure of shallow-water hake (Merluccius capensis) in the Benguela Current Large Marine Ecosystem inferred using a geostatistical population model. Fisheries Research, vol: 179:156-167, DOI: dx.doi.org/10.1016/j.fishres.2016.02.026
21. Kathena J, Nielsen A, Thygesen UH, Berg C (2016) Hake Species (Merluccius capensis and M. paradoxus) Assessment in The Benguela Current Large Marine Ecosystem. Envir. Devel. 17: 193-201
22. * Kiørboe T (2016) Fluid dynamic constraints on resource acquisition in small pelagic organisms. Europ Phys J ST, 225: 671–685. DOI: 10.1140/epjst/e2015-50261-1
23. * Kiørboe T (2016) Foraging mode and prey size spectra in suspension feeding copepods and other zooplankton. Mar Ecol Prog Ser 558: 15-20.
24. * Kiørboe T, Gonçalves RJ, Couespel D, van Someren Gréve H, Saiz E, Tiselius P (2016) Prey perception in feeding-current feeding copepods. Limnol Oceanogr, 61: 1169–1171. doi: 10.1002/lno.10293
25. Kokkalis A, Eikeset AM, Thygesen UH, Steingrund P, Andersen KH (2016) Estimating uncertainty of data limited stock assessment. ICES Journal of Marine Science, DOI: dx.doi.org/10.1093/icesjms/fsw145
26. Le Quéré C, Buitenhuis ET, Moriarty R, Alvain S, Aumont O , Bopp L, Chollet S, Enright C, Franklin DJ, Geider RJ, Harrison SP, Hirst AG, Larsen S, Legendre L, Platt T, Prentice IC, Rivkin RB, Sathyendranath S, Stephens N, Vogt M, Sailley S, Vallina SM (2016) Role of zooplankton dynamics for Southern Ocean phytoplankton biomass and global biogeochemical cycles. Biogeosciences 13: 4111-4133. doi:10.5194/bg-13-4111-2016
27. * Lindegren M, Checkley DM Jr., Ohman MD, Koslow A, Goericke R (2016) Resilience and Stability of a Pelagic Marine Ecosystem. Proceedings of the Royal Society B-Biological Sciences, 283: 20151931.
28. * Lindemann C, Fiksen Ø, Andersen KH, Aksnes DL (2016) Scaling laws in phytoplankton nutrient uptake affinity. Frontiers in Marine Science doi: 10.3389/fmars.2016.00026.
29. Mariani P, Krivan V, MacKenzie B, Mullon C (2016) The migration game in habitat network: the case of tuna. Theoretical Ecology, vol 9, no. 2, pp. 219-232., 10.1007/s12080-015-0290-8
30. * Menden-Deuer S, Kiørboe T (2016) Small bugs with a big impact: linking plankton ecology with ecosystem processes. J Plankton Res 38: 1036–1043. doi:10.1093/plankt/fbw049
31. Mitra A, Flynn KJ, Tillmann U, Raven JA, Caron D, Stoecker DK, Not F, Hansen PJ, Hallegraeff G, Sanders RW, Wilken S, McManus G, Johnson M, Pitta P, Vagen S, Berge T, Calbet A, Thingstad F, Jeong HJ, Burkholder J-A, Glibert PM, Granéli E, Lundgren V (2016) Defining planktonic protist functional groups on mechanisms for energy and nutrient acquisition; incorporation of diverse mixotrophic strategies. Protist 167: 106-120
32. * Neuheimer AB, Hartvig M, Heuschele J, Hylander S, Kiørboe T, Olsson K, Sainmont J, Andersen KH (2016) Adult and offspring size in the ocean: A database of size metrics and conversion factors (Data Paper) Ecology, 97(4): 1083
33. Nielsen LT, Hansen PJ, Krock B, Vismann B (2016) Accumulation, transformation and breakdown of DSP toxins from the toxic dinoflagellate Dinophysis acuta in blue mussels, Mytilus edulis. Toxicon 117: 84-93
34. * Olsson KH, Gislason H, Andersen KH (2016) Differences in density-dependence drive dual offspring size strategies in fish. Journal of Theoretical Biology 407: 118–127.
35. * Olsson KH, Gislason H (2016) Testing reproductive allometry in fish. ICES Journal of Marine Science: Journal du Conseil, 73(6):1466-1473. doi: 10.1093/icesjms/fsw017
36. Payne MR, Barange M, Cheung WWL, MacKenzie BR, Batchelder HP, Cormon X, Eddy TD, et al. (2016) Uncertainties in projecting climate-change impacts in marine ecosystems. ICES Journal of Marine Science: Journal du Conseil, 73: 1272–1282.
37. *Pécuchet L, Törnroos A, Lindegren M (2016) Patterns and drivers of fish community assembly in a large marine ecosystem. Marine Ecology Progress Series 546: 239-248
38. Ravn-Jonsen L, Andersen KH, Vestergaard N (2016) An Indicator for Ecosystem Externalities in Fishing. Natural Resource Modeling 29(3) 400-425.
39. Rijnsdorp AD, Bastardie F, Bolam SG, Buhl-Mortensen L, Eigaard OR, Hamons KG, Hiddink JG, Hintzen NT, Ivanovic A, Kenny A, Laffargue P, Nielsen JR, O’Neill G, Piet GJ, Polet H, Sala A, Smith C, van Denderen PD, van Kooten T, Zengin M. (2016) Towards a framework for the quantitative assessment of trawling impact on the seabed and benthic ecosystem. ICES Journal of Marine Science 73: i127-138.
40. * Schnedler-Meyer NA, Mariani P, Kiørboe T (2016) The global susceptibility of coastal forage fish to competition by large jellyfish. Proc R Soc B 283: 20161931
41. Selander E, Heuschele J, Nylund GM, Pohnert G, Pavia H, Bjærke O, Pender-Healy L, Tiselius P, Kiørboe T (2016) Solid phase extraction and metabolic profiling of exudates from living copepods. PeerJ. 4: e1529. doi.org/10.7717/peerj.1529
42. Stoecker DK, Hansen PJ, Caron D, Mitra A (2016/2017) Mixotrophy in the Marine Plankton. Annual Review of Marine Science 9:2.1-2.25 (e-pub/publ)
43. * Thonig A, Knott KE, Kesäniemi JE, Hansen BW, Banta GT (2016) Population and reproductive dynamics of the polychaete Pygospio elegans in a boreal estuary complex. Invertebrate Biology 135(4): 370-384
44. Thygesen UH (2016) A diffusion approximation based on renewal processes with applications to strongly biased run–tumble motion. Bulletin of Mathematical Biology 78(3):556-579, DOI: dx.doi.org/10.1007/s11538-016-0155-3
45. Thygesen UH, Sommer L, Evans K, Patterson TA (2016) Dynamic optimal foraging theory explains vertical migrations of bigeye tuna. Ecology 97(7):1852-1861, DOI: dx.doi.org/10.1890/15-1130.1
46. * Traving SJ, Bentzon-Tilia M, Knudsen-Leerbeck H, Mantikci M, Hansen JLS, Stedmon CA, Sørensen H, Markager S and Riemann L (2016) Coupling bacterioplankton populations and environment to community function in coastal temperate waters. Frontiers in Microbiology, 7 (1533): 1-13
47. * Tsoukali S, Olsson KH, Visser AW, MacKenzie BR (2016) Adult lifetime reproductive value in fish depends on size and fecundity type. Can. J. Fish. Aqua. Sci. 73(9): 1405-1412, 10.1139/cjfas-2015-0378
48. * Tsoukali S, Visser AW, MacKenzie BR (2016) Functional responses of North Atlantic fish eggs to increasing temperature. Marine Ecology Progress Series 555: 151-165; doi: 10.3354/meps11758
49. van Denderen PD, Rijnsdorp AD, van Kooten T. (2016) Using marine reserves to manage impact of bottom trawl fisheries requires consideration of benthic food-web interactions. Ecological Applications 26 (7): 2302-2310
50. van Deurs M, Persson A, Lindegren M, Jacobsen C, Jorgensen C, Neuenfeldt S, Nilsson A (2016) Marine ecosystem connectivity mediated by migrant-resident interactions and the concomitant cross-system flux of lipids. Ecology and Evolution doi:10.1002/ece3.2167
51. * Weisse T, Anderson R, Arndt H, Calbet A, Hansen PJ, Montagnes DJS (2016) Functional ecology of aquatic phagotrophic protists – concepts, limitations, and perspectives. J. Eur. Protistol. 55: 50–74

2015

1. Almeda R, Connelly TL, Buskey E (2015) How much crude oil can zooplankton ingest? Estimating the quantity of dispersed crude oil defecated by planktonic copepods. Environmental Pollution. doi:10.1016/j.envpol.2015.10.041.
   
   
2. *Andersen A, Wadhwa N, Kiørboe T (2015) Quiet swimming at low Reynolds number. Phys. Rev. E, 91: 042712. DOI:10.1103/PhysRevE.91.042712
   (Featured by APS Physics Central: www.physicscentral.com/buzz/blog/index.cfm?postid=7102857878385272483)
   
   
3. *Andersen KH, Aksnes DL, Berge T, Fiksen Ø, Visser AW. (2015) Modeling emergent trophic strategies in plankton. J. Plankton Research 37(5) 862-868. doi:10.1093/plankt/fbv054
   
   
4. *Andersen KH, Beyer JE (2015): Size structure, not metabolic scaling rules, determines fisheries reference points Fish and Fisheries 16(1) 1-22.
   
   
5. *Andersen KH, Brander K, Ravn-Jonsen LJ (2015). Trade-offs between objectives for ecosystem management of fisheries Ecological Applications 25: 1390-1396.
   
   
6. *Andersen KH, Jacobsen NS, Farnsworth KD (2015) The theoretical foundations for size spectrum models of fish communities. Canadian Journal Fisheries Aquatic Sciences. doi:10.1139/cjfas-2015-0230
   
   
7. *Brun P, Kiørboe T, Payne M (2015) Measuring evolutionary adaptations of phytoplankton with local field observations. PNAS www.pnas.org/cgi/doi/10.1073/pnas.1513353112
   
   
8. *Brun P, Vogt M, Payne M, Gruber N, O’Brien C, Buitenhuis ET, Le Quéré C, Leblanc K, Luo YW (2015). Ecological niches of open ocean phytoplankton taxa. Limnol Oceanogr 60: 1020-1038
   
   
9. Burgess MG, Diekert FK, Jacobsen NS, Andersen KH, Gaines SD (2015). Remaining questions in the case for balanced harvesting. Fish. doi: 10.1111/faf.12123.
   
   
10. Chakraborty S (2015) The influence of generalist predators in spatially extended predator-prey systems. Ecological Complexity 23: 50-60.
    
    
11. Chakraborty S, Kooi B, Biswas B, Chattopadhyay J (2015) Revealing the role of predator interference in a predator-prey system with disease in prey population. Ecological Complexity 21: 100-111.
    
    
12. Dickey-Collas, M., Hintzen, N. T., Nash, R. D. M., Schon, P.-J., and Payne, M. R. 2015. Quirky patterns in time-series of estimates of recruitment could be artefacts. ICES Journal of Marine Science, 72: 111–116

     

13. *Ergin FG, Watz BB, Wadhwa N (2015) Pixel-accurate dynamic masking and flow measurements around small breaststroke-swimmers using long-distance MicroPIV. Proceedings of the 11th International Symposium on Particle Image Velocimetry - PIV15, Santa Barbara, CA.
    
    
14. Ferreira ASA, Hátún H, Counillon F, Payne MR, Visser AW (2015). Synoptic scale analysis of mechanisms driving surface chlorophyll dynamics in the North Atlantic. Biogeosciences, 12(1), 3641-3653
    
    
15. Frisk C, Andersen KH, Temming A, Herrmann JP, Madsen KS, Kraus G (2015): Environmental effects on sprat (Sprattus sprattus) physiology and growth at the distribution frontier: A bioenergetic modelling approach. Ecological Modelling 299130–139.
    
    
16. *Glazier DS, Hirst AG, Atkinson D (2015) Shape shifting predicts ontogenetic changes in metabolic scaling in diverse aquatic invertebrates. Proceedings of the Royal Society B 282: 20142302. doi:10.1098/rspb.2014.2302
    
    
17. *Gonçalves RJ, Kiørboe T (2015) Perceiving the algae: how feeding-current feeding copepods detect their non-motile prey. Limnol Oceanogr 60: 1286–1297
    
    
18. *Horne C, Hirst AG, Atkinson D (2015) Temperature-size responses match latitudinal-size clines in arthropods, revealing critical differences between aquatic and terrestrial species. Ecology Letters 18: 327-335. doi: 10.1111/ele.12413
    
    
19. *Horne C, Hirst A, Atkinson D, Neves A, Kiørboe T (submitted) A global synthesis of.
    
    
20. Huse G, MacKenzie BR, Trenkel V, Doray M, Nøttestad L, Oskarsson G (2015) Spatially explicit estimates of stocks sizes, structure and biomass of herring and blue whiting, and catch data of bluefin tuna. Earth System Science Data Discussions 7: 35-46. doi:10.5194/essd-7-35-2015 (OA)
    
    
21. Hylander S, Kiørboe T, Snoeijs P, Sommaruga R, Nielsen TG (2015) Concentrations of sunscreens and antioxidant pigments in Arctic Calanus spp. in relation to ice cover, ultraviolet radiation, and the phytoplankton spring bloom. Limnol Oceanogr 60: 2197-2206
    
    
22. *Jacobsen NS, Essington TE, Andersen KH (2015). Comparing model predictions for ecosystem based management. Can. J. Fish. Aquat. Sci. NRC Research Press. doi: 10.1139/cjfas-2014-0561.
    
    
23. Jaspers C, Møller LF, Kiørboe T (2015) Egg production rates under variable food conditions and starvation in the comb jelly Mnemiopsis leidyi - insights to its invasion success in northern Europe. J Plankton Res 37: 1011-1018. doi:10.1093/plankt/fbv017
    
    
24. Jónasdóttir SH, Visser AW, Richardson K, Heath MR. (2015) Seasonal copepod lipid pump promotes carbon sequestration in the deep North Atlantic. Proceedings of the National Academy Sciences. 112 no. 39: 12122–12126. doi:10.1073/pnas.1512110112
    
    
25. *Kiørboe T (submitted) Fluid dynamic constraints on resource acquisition in small pelagic organisms. Submitted.
    
    
26. *Kiørboe T, Ceballos S, Thygesen UH (2015) Interrelations between senescence, life history traits, and behaviour in planktonic copepods. Ecology 96: 2225-2235
    
    
27. Kokkalis A, Thygesen UH, Nielsen A, Andersen KH (2015) Limits to the reliability of size-based fishing status estimation for data-poor stocks. Fisheries Research 171: 4-11
    
    
28. Kolding J, Jacobsen NS, Andersen KH, van Zwieten P (2015) Maximizing fisheries yields while maintaining community structure. Canadian Journal of Fisheries Aquatic Sciences.
    
    
29. Logue JB, Stedmon CA, Kellerman AM, Nielsen NJ, Andersson AF, Laudon H, Kritzberg ES (2015) Experimental insights into the importance of aquatic bacterial community composition to the degradation of dissolved organic matter. ISME J 1-13
    
    
30. *Martens EA, Wadhwa N, Nis S. Jacobsen NS, Christian Lindemann C, Andersen KH, Visser AW. (2015) Size structures sensory hierarchy in ocean life. Proceedings of the Royal Society B. 282: 20151346. dx.doi.org/10.1098/rspb.2015.1346
    
    
31. Maud J, Atkinson A, Hirst AG, Lindeque PK, Widdicombe CE, Harmer RA, McEvoy AJ, Cummings DC (2015) How does Calanus helgolandicus maintain its population in a variable environment? Analysis of a 25-year time series from the English Channel. Progress in Oceanography 137: 513-523
    
    
32. *Neuheimer AB, Hartvig M, Heuschele J, Hylander S, Kiørboe T, Olsson K, Sainmont J, Andersen KH (2015) Adult and offspring size in the ocean: A database of size metrics and conversion factor (Data Paper) Ecology in press
    
    
33. *Neuheimer AB, Hartvig M, Heuschele J, Hylander S, Kiørboe T, Olsson K, Sainmont J, Andersen KH (2015) Adult and offspring size in the ocean over 17 orders of magnitude follows two life history strategies. Ecology 96: 3303-3311
    
    
34. *Nielsen LT, Kiørboe T (2015) Feeding currents facilitate a mixotrophic way of life. ISME Journal, 9, 2117–2127, doi:10.1038/ismej.2015.27.
    
    
35. *Pécuchet L, Törnroos A, Lindegren M (2015) Environmental filtering drives functional diversity of fish communities in a large brackish marine ecosystem. Marine Ecology-Progress Series (accepted)
    
    
36. Riisgaard K, Nielsen TG, Hansen PJ (2015) Impact of elevated pH on Arctic spring bloom succession. Marine Ecology Progress Series530:63-75
    
    
37. Rullyanto A, Jónasdóttir SH, Visser, AW, (2015). Advective loss of overwintering Calanus finmarchicus from the Faroe-Shetland channel. Deep Sea Research Part I: Oceanographic Research Papers. 98, 76–82
    
    
38. *Sainmont J, Andersen KH, Thygesen UH, Fiksen Ø, Visser AW. (2015) An effective algorithm for approximating adaptive behavior in seasonal environments. Ecological Modelling. 311: 20-30
    
    
39. *Sichlau MH, Thygesen UH, Nielsen EE, Kiørboe T (2015) Mating success and sexual selection in a pelagic copepod, Temora longicornis: Evidence from paternity analyses. Limnol. Oceanogr. 60: 600–610. doi: 10.1002/lno.10052
    
    
40. Thoisen C, Riisgaard K, Lundholm N, Nielsen TG, Hansen PJ (2015) Effect of acidification on an Arctic phytoplankton community from Disko Bay, West Greenland. Marine Ecology Progress Series 520: 21-34
    
    
41. *Traving SJ, Thygesen, UH, Riemann L, Stedmon CA (2015) A model of extracellular enzymes in free-living microbes: which strategy pays off? AEM 81:7385-7393

    (Featured in the AEM Editorial Spotlight: http://aem.asm.org/content/81/21/7349.full
    
    

42. *Törnroos A, Nordström MC, Aarnio K, Bonsdorff E. (2015) Environmental context drives trophic trait plasticity in a key species, the tellinid clam Macoma balthica L. Journal of Experimental Marine Biology and Ecology 472: 32-40
    
    
43. Visser AW, Nielsen TG, Middelboe M, Høyer JI, Markager S. (2015). Oceanography and the base of the pelagic food web in the southern Indian Ocean. Journal of Plankton Research. doi:10.1093/plankt/fbv019
    
    
44. *Zhang L, Andersen KH, Dieckmann U, Brännström Å (2015): Four types of interference competition and their impacts on the ecology and evolution of size-structured populations and communities. J. Theoretical Biology 380: 280-290.

2014 

1. Augustine,S., Jaspers C, Kooijman SALM, Carlotti F, Poggiale J-C, Freitas V, van der Veer HW, van Walraven L (2014). Mechanisms behind the metabolic flexibility of an invasive comb jelly. J. Sea Res. DOI:10.1016/j.seares.2014.09.005
   
   
2. Berge T, Hansen PJ (accepted, 2014). Role of the tertiary plastid of the predatory dinoflagellate Karlodinium armiger. Mar Ecol Prog Ser In press
   
   
3. Bianco G, Mariani P, Visser AW, Mazzocchi MG, Pigolotti S (2014). Analysis of self-overlap reveals trade-offs in plankton swimming trajectories. Journal of the Royal Society Interface. 11(96), 20140164
   
   
4. Blanchard JL, Andersen KH, Scott F, Hinzen NT, Piet G, Jennings S (2014). Evaluating targets and trade-offs among fisheries and conservation objectives using a multispecies size spectrum model. J. Applied Ecology, 51: 612-622
   
   
5. Bureau E, Schilder F, Elmegård M, Santos I, Thomsen J, Starke J (2014). Experimental Bifurcation Analysis of an Impact Oscillator – Determining Stability. Journal of Sound and Vibration 333(21): 5464-5474
   
   
6. Calduch-Verdiell N, MacKenzie BR, Vaupel JW, Andersen KH (2014). A life-history evaluation of the impact of maternal effects on recruitment and fisheries reference points. Canadian Journal of Fisheries and Aquatic Science 71: 1113–1120
   
   
7. Casale P, Mariani P (2014). The first “lost year” of Mediterranean sea turtles: dispersal patterns indicate subregional management units for conservation. Marine Ecology Progress Series. 498:263-274. doi: 10.3354/meps10640
   
   
8. Ceballos S, Sichlau MH, Heuschele J, Kiørboe T (2014). Low fertilization rates in a pelagic copepod caused by sexual selection?  J. Plankton Res 36: 736-742. doi:10.1093/plankt/fbu021
   
   
9. De Luca G, Mariani P, MacKenzie BR, Marsili M (2014). Fishing out collective memory of migratory schools.  J. Roy. Soc. Interface 11: 20140043. dx.doi.org/10.1098/rsif.2014.0043
   
   
10. Engelhard GH, Peck MA, Rindorf A, Smout S, van Deurs M, Raab K, Andersen KH, Garthe S, Lauerburg RAM, Scott F, Brunel T, Aarts G, van Kooten T, Dickey-Collas M (2014). Forage fish, their fisheries, and their predators: who drives whom? ICES J Mar Sci 71: 90-104
    
    
11. FitzGeorge-Balfour T, Hirst AG, Lucas CH, Craggs J (2014). Influence of copepod size and behaviour on vulnerability to predation by the scyphomedusa Aurelia aurita. J Plankton Res 36: 77-90 
    
    
12. Flynn KJ, Hansen PJ (2013). Cutting the canopy to defeat the “selfish gene”; conflicting selection pressures for the integration of phototrophy in mixotrophic protists. Protist 164: 811-823
    
    
13. Flynn, KJ, Stoecker DK, Mitra A, Raven JA, Glibert PM, Hansen PJ, Granéli E, Burkholder JM (2013). HORIZONS - Misuse of the phytoplankton-zooplankton dichotomy: The need to assign organisms as mixotrophs within plankton functional types. J Plankton Res 35: 3-11 Horizons
    
    
14. Gonçalves RJ, van Someren Gréve H, Couespel D, Kiørboe T (2014). Mechanisms of prey size selection in a suspension feeding copepod, Temora longicornis. Mar Ecol Prog Ser. 517: 61-74
    
    
15. Hansen PJ, Nielsen LT, Johnson MD, Berge T, Flynn KJ (2013). Acquired phototrophy in Mesodinium and Dinophysis – a review of cellular organization, prey selectivity, nutrient uptake and bioenergetics. Harmful Algae 28: 126-139
    
    
16. Hays GC, Christensen A, Fossette S, Schofield G, Talbot J, Mariani P (2014). Route optimization and solving Zermelo's navigation problem during long distance migration in cross flows. Ecology Letters. 17   Issue: 2   Pages: 137-143   doi: 10.1111/ele.12219
    
    
17. Heuschele J, Ceballos S, Andersen Borg CM, Bjærke O, Isari S, Lasley-Rasher R, Souissi A, Souissi S, Titelman J (2014). Non-consumptive effects of predator presence on copepod reproduction: insights from a mesocosm experiment. Mar Biol 161: 1653-1666doi:10.1007/s00227-014-2449-z
    
    
18. Heuschele J, Selander E (2014). The chemical ecology of copepods. J Plankton Res 36, Issue 4: 895-913 doi:10.1093/plankt/fbu025
    
    
19. Hirst A, Kiørboe T (2014). Macroevolutionary Patterns of Sexual Size Dimorphism in Copepods. Proc. R. Soc. B 281: 20140739.doi.org/10.1098/rspb.2014.0739
    
    
20. Hirst AG, Glazier DS, Atkinson D (2014). Body shape-shifting during growth permits tests that distinguish between competing geometric theories of metabolic scaling. Ecology Letters 17: 1274-1281. doi: 10.1111/ele.12334
    [Featured on front cover]
    
    
21. Hirst AG, Keister JE, Richardson AJ, Ward P, Shreeve RS, Escribano RV (2014). Re-assessing copepod growth using the Moult Rate Method. J Plankotn Res 36: 1224-1232. doi: 10.1093/plankt/fbu045
    
    
22. Hylander S, Grenwald J, Kiørboe T (2014). Fitness cost of UVR exposure in marine pelagic copepods. Funct. Ecol. 28: 149–158. doi: 10.1111/1365-2435.12159 
    
    
23. Jacobsen NS, Gislason H, Andersen KH. (2014). The consequences of balanced harvesting of fish communities. Proc. R. Soc. B 281: 20132701 
    
    
24. Kiørboe T, Hirst AG (2014). Shifts in mass-scaling of respiration, feeding, and growth rates across life-form transitions in marine pelagic organisms. Am. Nat. 183: E118–E130. DOI: 10.1086/675241
    
    
25. Kiørboe T, Jiang H, Gonçalves RJ, Nielsen LT, Wadhwa N (2014). Flow disturbances generated by feeding and swimming zooplankton. PNAS 111:11738–11743.
    (Featured in J.Exp Biol , in J. Plankton Res, and in Scientific American)
    
    
26. Kristensen K, Thygesen UH, Andersen KH, Beyer JE (2014). Estimating spatio-temporal dynamics of size-structured populations. Canadian Journal of Fisheries and Aquatic Science 71: 326–336.
    
    
27. Lika K, Augustine S, Pecquerie L, Kooijman SA (2014). The bijection from data to parameter space with the standard DEB model quantifies the supply-demand spectrum. J Theor Biol. doi.org/10.1016/j.jtbi.2014.03.025
    
    
28. Lindegren M,   Andersen KH, Casini M, Neuenfeldt S (2014). A metacommunity perspective on source-sink dynamics and management: the Baltic Sea as a case study. Ecological Applications 24:1820:1832
    
    
29. MacKenzie BR, Payne M, Boje J, Højer JL, Siegstad H (2014). A cascade of warming impacts brings bluefin tuna to Greenland waters. Global Change Biology 20: 2484–2491, doi: 10.1111/gcb.12597 
    (Featured on front cover of issue)
    
    
30. Martens EA, Wadhwa N, Jacobsen NS, Lindemann C, Andersen KH, Visser A (submitted). Size and sense in the Ocean. Journal of the Royal Society Interface
    
    
31. Marty L, Rochet MJ, Ernande B (2014). Temporal trends in age and size at maturation of four North Sea gadid species: cod, haddock, whiting and Norway pout. Marine Ecology Progress Series 497: 179-197
    
    
32. Mitra A, Flynn KJ, Burkholder JM, Berge T, Calbet A, Raven JA, Granéli E, Glibert PM,  Hansen PJ, Stoecker DK, Thingstad F, Tillmann U, Våge S, Wilken S, Zubkov M (2014). The role of mixotrophic protists in the biological carbon pump. Biogeosciences 11: 995-1005 
    
    
33. Murphy EJ, Watkins JL, Trathan PN, Reid K, Meredith MP, Hill SL, Thorpe SE, Johnston NM, Clarke A, Tarling GA, Collins MA, Forcada J, Atkinson A, Ward P, Staniland IJ, Pond DW, Cavanagh RA, Shreeve RS, Korb RE, Whitehouse MJ, Rodhouse PG, Enderlein P, Hirst AG, Martin AR, Briggs DR, Cunningham NJ, Fleming AH (2012). Spatial and temporal operation of the Scotia Sea ecosystem. In: Rogers AD, Johnston NM, Murphy EJ, Clarke A. (eds). Antarctic ecosystems: An extreme environment in a changing world. John Wiley & Sons, Ltd, 160-212
    
    
34. Neuheimer AB, MacKenzie BR. Explaining life history variation in a changing climate across a species’ range.  Ecology. 95: 3364-337.5
    
    
35. Prowe AEF, Pahlow M, Dutkiewicz S, Oschlies A (2014). How important is diversity for capturing environmental-change responses in ecosystem models? Biogeosciences 11(12): 3397-3407, doi: 10.5194/bg-11-3397-2014
    
    
36. Reuman DC, Gislason H, Barnes C, Mèlin F, Jennings S (2014). The marine diversity spectrum. J. Anim. Ecol., 83(4): 963-979. http://dx.doi.org/10.1111/1365-2656.12194
    
    
37. Sainmont J, Andersen, KH, Varpe Ø, Visser AW (2014). Capital versus income breeding in a seasonal Environment. American Naturalist 184 (4): DOI: 10.1086/677926
    
    
38. Sainmont J, Webster C, Heuschele J, Gislason A, Sylvander P, Wang M, Varpe Ø (2014). Inter- and intra-specific diurnal habitat selection of zooplankton during the spring bloom observed by Video Plankton Recorder. Marine Biology 161 (8): 1931-1941
    
    
39. Sanders R, Henson S, Koski M, De La Rocha CL, Painter SC, Poulton A, Riley J, Salihoglu B, Visser AW, Yool A, Bellerby R, Martin A (2014). The Biological Carbon Pump in the North Atlantic. Prog Oceanogr. DOI: 10.1016/j.pocean.2014.05.005
    
    
40. Schilder F, Bureau E, Santos I, Thomsen J, Starke J (2014, submitted). Continuation in Experiments: An Atlas Algorithm for Noise-Contaminated Zero Problems
    
    
41. Scott F, Blanchard JL, Andersen KH (2014). mizer: an R package for multispecies, trait-based and community size spectrum ecological modelling. Methods in Ecology and Evolution. 5: 1121-1125
    
    
42. van der Molen J, van Beek J, Augustine S, Vansteenbrugge L, van Walraven L, Langenberg V, van der Veer HW, Hostens K, Pitois S, Robbens J (2014). Modelling survival and connectivity of Mnemiopsis leidyi in the southern North Sea and Scheldt estuaries. Ocean Sci. Discuss. 11: 1561-1611
    
    
43. Wadhwa N, Andersen A, Kiørboe T (2014). Hydrodynamics and energetics of jumping copepod nauplii and copepodids. J Exp Biol 217: 1-10. doi:10.1242/jeb.105676
    
    
44. Zhang L, Thygesen UH, Banerjee M (2014). Size-dependent diffusion promotes the emergence of spatiotemporal patterns. Physical Review E: 90, issue: 1

Popular articles in 2014

1. Jacobsen, N.S. (2014) Fiskeyngel er fremtidens nytårstorsk, Aktuel Naturvidenskab 3 Juli 2014
   
   
2. Kiørboe, T., Andersen A. Bohr T (2014) Forskning på tværs af faggrænser. Aktuel Naturvidenskab, 1: 32-36 
   
   
3. Kiørboe, T, Hylstofte Sichlau, M (2014) Lækre lopper scorer bedst. Aktuel Naturvidenskab 3:8-11 
   
   
4. Olsson. K.H. (2014) Hvorfor lægger fisk små æg? Aktuel Naturvidenskab 5: 8-10 
    

2013

1. Andersen KH, Beyer JE (2013). Size structure, not metabolic scaling rules, determines fisheries reference points. Fish and Fisheries
   
   
2. Barton A, Pershing A, Litchman E, Record N, Edwards K, Finkel Z, Kiørboe T, Ward B (2013). The Biogeography of Marine Plankton Traits. Ecol. Lett. 16: 522–534. doi: 10.1111/ele.12063
   
   
3. Brander K (2013). Climate and current anthropogenic impacts on fisheries. Climatic Change 119: 9-21
   
   
4. Brander K, Neuheimer A, Andersen KH, Hartvig M (2013). Food for Thought: Overconfidence in model projections. ICES Journal of Marine Science 70(6), 1065–1068
   
   
5. Bureau E, Schilder F, Santos I, Thomsen J, Starke J (2013). Experimental Bifurcation Analysis of an Impact Oscillator – Tuning a Non-Invasive Control Scheme. Journal of Sound and Vibration 332(22), 5883–5897
   
   
6. Dickey-Collas M, Engelhard GH, Rindorf A, Raab K, Smout S, Aarts G, van Deurs M, Brunel T, Hoff A, Lauerburg RAM, Garthe S, Andersen KH, Scott F, van Kooten T, Beare D, Peck MA (2013). Ecosystem-based management objectives for the North Sea: riding the forage fish rollercoaster. ICES Journal of Marine Science. doi:10.1093/icesjms/fst075
   
   
7. FitzGeorge-Balfour T, Hirst AG, Lucas CH, Craggs J (2013). Influence of copepod size and behaviour on vulnerability to predation by the scyphomedusa Aurelia aurita. Journal of Plankton Research. doi: 10.1093/plankt/fbt077
   
   
8. Flynn KJ, Hansen PJ (2013). Cutting the canopy to defeat the "selfish gene"; conflicting selection pressures for the integration of phototrophy in mixotrophic protists. Protist. 164: 811-823
   
   
9. Flynn, KJ, Stoecker DK, Mitra A, Raven JA, Glibert PM, Hansen PJ, Granéli E, and Burkholder JM (2013) Misuse of the phytoplankton-zooplankton dichotomy: the need to assign organisms as mixotrophs within plankton functional types. Journal of Plankton Research. J. Plankton Res. 35: 3-11 doi:10.1093/plankt/fbs062
   
   
10. Gaididei Y, Gorria C, Berkemer R, Christiansen P, Kawamoto A, Sørensen M, Starke J (2013). Stochastic control of traffic patterns. Invited article for special issue “Nonlinear Partial Differential Equations: Theory and Applications to Complex Systems”
    
    
11. (editors: Henri Berestycki, Danielle Hilhorst, Frank Merle, Masayasu Mimura and Khashayar Pakdaman) of NHM (Networks and Heterogeneous Media), 8(1), 261–273, dedicated to Professor Hiroshi Matano on the occasion of his 60th birthday
    
    
12. Hansen PJ, Nielsen LT, Johnson M, Berge T, Flynn KJ (2013). Acquired phototrophy in Mesodinium and Dinophysis – A review of cellular organization, prey selectivity, nutrient uptake and bioenergetics. Harmful Algae 28:126-139
    
    
13. Hartvig M, Andersen KH (2013). Coexistence of structured populations with size-based prey selection. Theoretical Population Ecology 89:24-33
    
    
14. Heuschele J, Eliassen S, Kiørboe T (2013). Optimal mate choice patterns in pelagic copepods. Oecologia 172:399-408. doi 10.1007/s00442-012-2516-4
    
    
15. Hirst AG, Bonnet D, Conway DVP, Kiørboe T (2013). Female-biased sex ratios in marine pelagic copepods: Comment on Gusmão et al. (2013). Mar. Ecol. Prog. Ser. doi: 10.3354/meps10522
    
    
16. Hirst AG, Forster J (2013). When growth models are not universal: evidence from marine invertebrates. Proceedings of the Royal Society B 280:20131546. http://dx.doi.org/10.1098/rspb.2013.1546
    
    
17. Hollowed AB, Barange M, Beamish RJ, Brander K, et al (2013). Projected impacts of climate change on marine fish and fisheries. ICES Journal of Marine Science (ISSN: 10543139). dx.doi.org/10.1093/icesjms/fst081, 70: 1023-1037
    
    
18. Houle JE, Andersen KH, Farnsworth KD, Reid DG (2013). Emerging asymmetric interactions between forage and predator fisheries impose management trade-offs. Journal of Fish Biology 83(4) 890-904
    
    
19. Hylander S, Grenvald JC, Kiørboe T (2013). Fitness costs and benefits of ultraviolet radiation exposure in marine pelagic copepods. Functional Ecology. doi: 10.1111/1365-2435.12159
    
    
20. Jansen T, Gislason H (2013). Population Structure of Atlantic Mackerel (Scomber scombrus) PloS one 8 (5), e64744
    
    
21. Jaspers C, Haraldsson M, Lombard F, Bolte S, Kiørboe T (2013). Seasonal dynamics of early life stages of invasive and native ctenophores give clues to invasion and bloom potential in the Baltic Sea. J. Plankton Res. 35: 582–594
    
    
22. Jonsen ID, Basson M, Bestley S, Bravington MV, Patterson TA, Pedersen MW, Thomson R, Thygesen UH, and Wotherspoon SJ (2013). State-space models for bio-loggers: A methodological road map. Deep-Sea Research. Part 2: Topical Studies in Oceanography 88-89: 34-46. doi: http://dx.doi.org/10.1016/j.dsr2.2012.07.008
    
    
23. Kiørboe T (2013). Attack or attacked: The sensory and fluid mechanical constraints of copepod predator-prey interactions. Int Comp Biol, pp. 1–11. doi:10.1093/icb/ict021
    
    
24. Kiørboe T (2013). Zooplankton body composition. Limnol. Oceanogr. 58:1843-1850. doi:10.4319/lo.2013.58.5.1843
    
    
25. Kiørboe T, Jiang H (2013). To eat and not be eaten: Optimal foraging behavior in suspension feeding copepods. J. Roy. Soc. Int. 10: 20120693. doi.org/10.1098/rsif.2012.0693
    
    
26. Litchman E, Ohman M, Kiørboe T (2013). Trait-based approaches to zooplankton communities. J Plankton Res 35: 473–484
    (Featured on the front cover)
    
    
27. Lombard F, Guidi L, Kiørboe T (2013). Effect of type and concentration of ballasting particles on sinking rate of marine snow produced by the appendicularian Oikopleura dioica. PlosOne 8(9): e75676. doi:10.1371/journal.pone.0075676
    
    
28. Lombard F, Koski M, Kiørboe T (2013). Copepods use chemical trails to find sinking marine snow aggregates. Limnol. Oceanogr. 58: 185-192
    
    
29. MacKenzie B, Payne MR (2013). Fisheries: Manage declines. Nature, 495: 314
    
    
30. Mariani P, Andersen KH, Visser AW, Barton AD, Kiørboe T (2013). Control of plankton seasonal succession by adaptive grazing. Limnol Oceanogr 58(1) 173-184
    
    
31. Martens EA, Thutupalli S, Fourrière A, Hallatschek O (2013). Chimera states in mechanical oscillator networks. PNAS 2013 110: 10563-10567
    
    
32. Mitra K, Flynn J, Burkholder JM, Berge T, Calbet A, Raven JA, Granéli E, Glibert PM,Hansen PJ, Stoecker DK, Thingstad F, Tillmann U, Våge S, Wilken S, Zubkov MV (2013). The role of mixotrophic protists in the biological carbon pump. Biogeosciences Discussions 10: 13535-13562
    
    
33. Neuheimer AB, MacKenzie BR (2013). Explaining variation in life history timing across a species’ range: Spawning time in an exploited marine fish. ICES Annual Science Conference, Sept. 23-27, 2013
    
    
34. Payne MR (2013). Climate change at the dinner table. Nature, 497: 320–321
    (Featured as the 2013 Editors choice in Nature 504: 386)
    
    
35. Peck MA, Neuenfeldt S, Essington T, Trenkel VM, Takasuka A, Gislason H, Dickey-Collas M, Andersen KH, Ravn-Jonsen L, Vestergaard N, Kvamsdal S, Gårdmark A, Link J, Rice JC (2013). Forage fish interactions: A symposium on creating the tools for ecosystem-based management of marine resources. ICES Journal of Marine Science, 71:1-4. doi:10.1093/icesjms/fst174
    
    
36. Poloczanska ES,…, Brander K, et al (2013). Global imprint of climate change on marine life. Nature Clim.Change 3 (10): 919-25
    
    
37. Prowe AEF, Pahlow M, Dutkiewicz S, Oschlies A (2013). Small diversity effects on ocean primary production under environmental change in a diversity-resolving ocean ecosystem model. Biogeosciences Discuss. 10:12571-12591. doi:10.5194/bgd-10-12571-2013
    
    
38. Rice J, Daan N, Gislason H, Pope JG (2013). Does functional redundancy stabilize fish communities? ICES Journal of Marine Science: Journal du Conseil 70 (4), 734-742
    
    
39. Ross SD, Behrens JW, Brander K, Methling C, Mork J (2013). Haemoglobin genotypes in cod (Gadus morhua L): their geographic distribution and physiological significance. Comparative Biochemistry and Physiology. Part A: Molecular & Integrative Physiology. 166:158-168
    
    
40. Sainmont J, Thygesen UH, Visser AW (2013). Diel vertical migration arising in a habitat selection game. Theoretical Ecology, 6(2):241–251. doi: 10.1007/s12080-012-0174-0
    
    
41. Salinger MJ, Bell JD, Evans K, Hobday AJ, Allain V, Brander K, Dexter P, Harrison DE, Hollowed AB, Lee B, Stefanski R (2013). Climate and oceanic fisheries: recent observations and projections and future needs. Climatic Change. 119: 213-221
    
    
42. Sparrevohn C, Lindegren M, MacKenzie BR (2013). Climatic induced response of commercially important flatfish species near Denmark during the 20th century. Fisheries Oceanography 22: 400-408
    
    
43. Starke J (2013). Dynamical System Approaches to Combinatorial Optimization. Invited Chapter. Pages 1065-1124 in Pardalos P, Du D-Z, Graham R: Handbook of Combinatorial Optimization, 2nd Edition. Springer Verlag, Heidelberg, New York
    
    
44. Tiselius P, Saiz E, Kiørboe T (2013). Sensory capabilities and food capture of two small copepods, Paracalanus parvus and Pseudocalanus sp. Limnol Oceanogr. 58: 1657-1666. doi:10.4319/lo.2013.58.5.1657
    
    
45. Visser AW, Fiksen Ø (2013). Optimal foraging in marine ecosystem models: selectivity, profitability and switching. Mar Ecol Prog Ser 473: 91-101
    
    
46. Zhang L, Hartvig M, Knudsen M, Andersen KH (2013). Size-based predictions of food web patterns. Theoretical Ecology 

Popular articles in 2013

1. Kiørboe T, Andersen A (2013). Sirupssvømmerne. Weekendavisen, Ideer, 19: 8-9
   
   
2. Payne MR, Kiørboe T (2013). Immigranter sydfra på tallerkenen. Weekendavisen, Ideer, 20: 3
   
   
3. Nielsen LT, Kiørboe T (2013). Plankton med helgardering. Weekendavisen, Ideer, 31: 4-5
   
   
4. Kiørboe T, Heuschele J, Selander E (2013). Havets dufte. Aktuel Naturvidenskab 3: 30-33
   Article pdf
   
   
5. Kiørboe T, Hylander S (2013). Plankton beskytter sig med solcreme. Videnskab.dk 18 november.
   http://videnskab.dk/miljo-naturvidenskab/plankton-beskytter-sig-med-solcreme
   
   
6. Havets usynlige liv, Billed-artikel i ‘Ud og Se’, Juni 2013. http://ipaper.ipapercms.dk/DSB/udogse/2013/Juni2013/

2012

1. Andersen MB, Bruno E, and Kiørboe T (2012) The Kinematics of Swimming and Relocation Jumps in Copepod Nauplii. PLosOne 7(10): e47486. doi:10.1371/journal.pone.0047486
   
   
2. Bell J, Evans K, Hobday A, Allain V, Brander K, Dexter P, Harrison E, Hollowed A, Lee B, and Stefanski R (2012) Climate and oceanic fisheries: Recent observations and projections, and future needs. Climatic Change (ISSN: 0165-0009)
   
   
3. Berge T, Poulsen LK, Moldrup M, Daugbjerg N, and Hansen PJ (2012) Marine microalgae attack and feed on metazoans. ISME Journal. 6: 1926-1936 
   (Selected as Editors Choice in Science and Featured article in ISME Journal)
   
   
4. Berge T, Daugbjerg N, and Hansen PJ (2012) Isolation and cultivation of microalgae select for low production rate and tolerance to high pH. Harmful algae 20: 101-110
   
   
5. Bergkvist J, Thor P, Jakobsen HH, Wängberg SA, and Selander E (2012) Grazer-induced chain length plasticity reduces grazing risk in a marine diatom. Limnology and Oceanography 57: 318-324
   
   
6. Brander K (2012) Climate and current anthropogenic impacts on fisheries. Climatic Change. doi:10.1007/s10584-012-0541-2
   
   
7. Brander K, and Havenhand J (2012) Impacts of climate change, including acidification, on marine ecosystems and fisheries. In: Climate impacts on the Baltic Sea: From science to policy (ISBN: 978-3-642-25727-8), pages: 129-160, 2012, Springer, Berlin
   
   
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