Publications

2024

Huang Y, Ryderheim F, Kiørboe T (2024) Revisiting the burglar-alarm hypothesis: a behavioral cascade mediated by dinoflagellate bioluminescence. Functional Ecology 38 (2), 306-314. doi.org/10.1111/1365-2435.14488
Maar K, Shavit U, Andersen A, Kiørboe T (2024) The fluid dynamics of barnacle feeding. J Exp Biol doi.org/10.1242/jeb.246541
Ottman D, Andersen KH, van Denderen PD (2024): Biomass and trait biogeography of cephalopods on the European and North American continental shelves.Global Ecology and Biogrography 33 (3), 439-449. doi.org/10.1111/geb.13803
Pujolar JM (2024) editor, special issue reprint: Biology and Ecology of Eels. doi.org/10.3390/books978-3-7258-0228-9

2023

Andersen KH, Visser AW (2023) From cell size and first principles to structure and function of unicellular plankton communities. Progress in Oceanography 213, 102995. doi.org/10.1016/j.pocean.2023.102995
Asadzadeh SS, Walther JJ, Kiørboe T (2023) Conflicting roles of flagella in planktonic protists: Propulsion, resource acquisition, and stealth. PRX Life 1: 013002. doi.org/10.1103/PRXLife.1.013002
Brandl SJ, Lefcheck JS, Bates AE, Rasher DB, Norin T (2023) Can metabolic traits explain animal community assembly and functioning? Biological Reviews 98, 1-18. doi.org/10.1111/brv.12892
Flensborg LC, Maureaud AA, Bravo DN, Lindegren M (2023) An indicator-based approach for assessing marine ecosystem resilience. ICES Journal of Marine Science 80 (5), 1487-1499. doi.org/10.1093/icesjms/fsad077
Frølich EF (2023) Copuling population dynamics and diel migration patterns. Theoretical Population Biology 151, 19-27. doi.org/10.1016/j.tpb.2023.03.004
Frølich EF, Thygesen UH, Andersen KH (2023) Scaling from optimal behavior to population dynamics and ecosystem function. Ecological Complexity (52) 101027. doi.org/10.1016/j.ecocom.2022.101027
Hansen HH, Andersen KH, Bergman E (2023) Projecting fish community responses to dam removal – data-limited modeling. doi.org/10.1016/j.ecolind.2023.110805
Hiddink JG, Valanko S, Delargy AJ, van Denderen PD (2023) Setting thresholds for good ecosystem state in marine seabed systems and beyond. ICES Journal of Marine Science 80 (4), 698-709. doi.org/10.1093/icesjms/fsad035
Jaspers C, Hopcroft RR, Kiørboe T, Lombard F, López-Urrutia A, Everett JD, Richardson AD (2023) Gelatinous larvacean zooplankton can enhance trophic transfer and carbon sequestration. Trends Ecol Evol 38 (10) https://doi.org/10.1016/j.tree.2023.05.005
Jensen KR, Andersen P, Andersen NR, Bruhn A, Buur H, Carl H, Jakobsen H, Jaspers C, Lundgreen K, Nielsen R, Strandberg B, Stæhr PAU (2023) Reviewing Introduction Histories, Pathways, Invasiveness, and Impact of Non-Indigenous Species in Danish Marine Waters. Diversity 15, 434. doi.org/10.3390/d15030434
Kiørboe T (2023) Predation in a microbial world: mechanisms and trade-offs of flagellate foraging. Ann Rev Mar Sci 16: doi.org/10.1146/annurev-marine-020123-102001
Kragesteen TJ, Johannesen TT, Sandvik A, Andersen KH, Johnsen IA (2023) Salmon lice dispersal and population model for management strategy evaluation. Aquaculture 575, 739759. doi.org/10.1016/j.aquaculture.2023.739759
Metcalfe NB, Bellman J, Bize P, Blier PU, Crespel A, Dawson NJ, Dunn RE, Halsey LG, Hood WR, Hopkins M, Killen SS, McLennan D, Nadler LE, Nati JJH, Noakes MJ, Norin T, Ozanne SE, Peaker M, Pettersen AK, Przybylska-Piech A, Rathery A, Récapet C, Rodríquez E, Salin K, Stier A, Thoral E, Westerterp KR, Westerterp-Plantenga MS, Wojciechowski MS, Monaghan P (2023) Solving the conundrum of intra-specific variation in metabolic rate: A multidisciplinary conceptual and methodological toolkit. BioEssays 45, 2300026. doi.org/10.1002/bies.202300026
Millette NC, Gast RJ, Luo JY, Moeller HV, Stamieszkin K, Andersen KH, Brownlee EF, Cohen NR, Duhamel S, Dutkiewicz S, Glibert PM, Johnson MD, Leles SG, Maloney AE, Mcmanus GB, Poulton N, Princiotta SD, Sanders RW, Wilken S (2023) Mixoplankton and mixotrophy: future research priorities. Journal of Plankton Research 45:4, 576-596. doi.org/10.1093/plankt/fbad020
Montanyès M, Weigel B, Lindegren M (2023) Community assembly processes and drivers shaping marine fish community structure in the North Sea. Ecography, e06642. doi.org/10.1111/ecog.06642
Pinti J, DeVries T, Norin T, Serra-Pompei C, Proud R, Siegel DA, Kiørboe T, Petrik CM, Andersen KH, Brierley AS, Visser AW (2023) Model estimates of metazoans’ contributions to the biological carbon pump. Biogeosciences, 20: 997–1009. doi.org/10.5194/bg-20-997-2023
Piontek R, Jaspers C, Boersma M, Arkhipkin A (2023). Temporal and spatial variability in the mesozooplankton community off the Falkland Islands (Southwest Atlantic). Regional Studies in Marine Science 66, 103147. doi.org/10.1016/j.rsma.2023.103147
Pujolar JM, Breitburg D, Lee J, Decker MB, Jaspers C (2023) Hybridization and adaptive introgression in a marine invasive species in native habitats. iScience 26 (12):108430. doi.org/10.1016/j.isci.2023.108430
Reeve AH, Gower G, Pujolar JM, Smith BT,Petersen B, Olsson U, Haryoko T, Koane B, Maiah G, Blom MPK, Ericson PGP, Irestedt M, Racimo F, Jønsson KA (2023) Population genomics of the island thrush elucidates one of earth’s archipelagic radiations. Evolution Letters, 7 (1), 24-36. doi.org/10.1093/evlett/qrac006
Reeve AH, Kennedy JD, Pujolar JM, Petersen B, Blom MPK, Alstrom P, Haryoko T, Ericson PGP, Irestedt M, Nylander JAA, Jønsson KA (2023) The formation of the Indo-Pacific montane avifauna. Nature Communications 14, 8215. doi.org/10.1038/s41467-023-43964-y
Ryderheim F, Thygesen UH, Kiørboe T (2023) Short handling times allow for active prey selection in suspension feeding copepods. Limnol Oceanogr. 68, 891-901. doi.org/10.1002/lno.12317
Smith CJ, Papadopoulou NK, Maina I, Kavadas S, van Denderen PD, Katsiaras N, Reizopoulou S, Karakassis I, Tselepides A, Tsikopoulou I (2023) Relating benthic sensitivity and status to spatial distribution and intensity of trawling in the Eastern Mediterranean. Ecological Indicators 150, 13 p, 110286. doi.org/10.1016/j.ecolind.2023.110286
Soto-Angel JJ, Jaspers C, Hosia A, Majaneva S, Martell L, Burkhardt P (2023) Are we there yet to eliminate the terms larva, metamorphosis, and dissogeny from the ctenophore literature? Proceedings of the National Academy of Sciences 120, e2218317120. doi.org/10.1073/pnas.2218317120
Suzuki S, Miano F, Asadzadeh SS, Simpson AGB, Kiørboe T (2023) Foraging mechanisms in excavate flagellates shed new light on the functional ecology of early eukaryotes. bioRxiv preprint, doi.org/10.1101/2023.11.20.567814
Suzuki-Tellier S, Kiørboe T, Simpson AGB (2023) The function of the feeding groove of ‘typical excavate’ flagellates. J Euk Microbiol 00, e13016. doi.org/10.1111/jeu.13016
Van Denderen PD, Maureaud A, Andersen KH, Gaichas S, Lindegren M, Petrik CM, Stock CA, Collie J (2023) Demersal fish biomass declines with temperature across productive shelf seas. Global Ecology and Biogeography 32(10) 1846-1857. doi.org/10.1111/geb.13732
Vastenhoud BMJ, Bastardie F, Andersen KH, Speirs DC, Nielsen JR (2023) Economic viability of a large vessel mesopelagic fishery under ecological uncertainty. Front. Mar. Sci 10-2023. doi.org/10.3389/fmars.2023.1285793
Vivó-Pons A, Blomqvist M, Törnroos A, Lindegren M (2023) A trait-based approach to assess niche overlap and functional distinctiveness between non-indigenous and native species. Ecology Letters 26, 1911-1925. doi.org/10.1111/ele.14315
Vivó-Pons A, Wallin-Kihlberg I, Olsson J, Ljungberg P, Behrens J, Lindegren M (2023) The devil is in the details: exploring how functionally distinct round goby is among native fish in the Baltic Sea. NeoBiota 89: 161-186. https://doi.org/10.3897/neobiota.89.110203

2022

Asadzadeh SS, Walther JH, Andersen A, Kiørboe T (2022) Hydrodynamic interactions are key in thrust-generation of hairy flagella, Physical Review Fluids, 7, 073101, doi.org/10.1103/PhysRevFluids.7.073101
Blewett TA, Binning SA, Weinrauch AM, Ivy CM, Rossi GS, Borowiec BG, Lau G, Overduin S, Aragao I, Norin T (2022) Physiological and behavioural strategies of aquatic animals living in fluctuating environments. Journal of Experimental Biology 225, jeb242503, doi.org/10.1242/jeb.242503
Brandl SJ, Quigley CN, Casey JM, Mercière A, Schiettekatte NMD, Norin T, Parravicini V, Cotê IM (2022) Metabolic rates mirror morphological and behavioral differences in two sand-dwelling coral reef gobies. Marine Ecology Progress Series 684, 79-90, doi.org/10.3354/meps13968
Carlson DF, Vivó-Pons A, Treier UA, Mätzler E, Meire L, Sejr M, Krause-Jensen D (2023) Mapping intertidal macrophytes in fjords in Southwest Greenland using Sentinel-2 imagery. Science of the Total Environment, 865, 161213. doi.org/10.1016/j.scitotenv.2022.161213
Cortese D, Crespel A, Mills SC, Norin T, Killen SS, Beldade R (2022) Adaptive effects of parental and developmental environments on offspring survival, growth and phenotype. Funct. Ecol. 36, 2983-2994, doi.org/10.1111/1365-2435.14202
Denéchère R, van Denderen PD, Andersen KH (2022). Deriving population scaling rules from individual-level metabolism and life history traits. American Naturalist 199(4) 564-575, doi.org/10.1086/718642
Eckford-Soper LK, Andersen KH, Hansen TF, Canfield DE (2022) A case for an active eukaryotic marine biosphere during the Proterozoic Era. PNAS 119 (41) e2122042119, doi.org/10.1073/pnas.2122042119
Ehrlich E, Thygesen UH, Kiørboe T (2022) Evolution of toxins as a public good in phytoplankton. Proc Roy Soc B 289 20220393. doi.org/10.1098/rspb.2022.0393
Frølich EF, Thygesen UH (2022) Population games with instantaneous behavior and the Rosenzweig–MacArthur model. Journal of Mathematical Biology. 85, 31 p. 52, doi.org/10.1007/s00285-022-01821-4
Frølich EF, Thygesen UH (2022) Solving multispecies population games in continuous space and time. Theoretical Population Biology 146, 36-45, doi.org/10.1016/j.tpb.2022.06.002
Frølich EF, Thygesen UH, Andersen KH (2022) Scaling from optimal behavior to population dynamics and ecosystem function. Ecological Complexity, 101027, doi.org/10.1016/j.ecocom.2022.101027
Grønning J, Kiørboe T (2022) Grazer-induced aggregation in diatoms. Limnol Oceanogr Lett, doi.org/10.1002/lol2.10282
Harrison JF, Biewener A, Bernhardt JR, Burger JR, Brown JH, Coto ZN, Duell ME, Lynch M, Moffett ER, Norin T, Pettersen AK, Smith FA, Somjee U, Traniello JFA, Williams TM (2022) White paper: an integrated perspective on the causes of hypometric metabolic scaling in animals. Integrative and Comparative Biology 62, 1395-1418, doi.org/10.1093/icb/icac136
Hinrichsen H-H, Piatkowski U, Jaspers C (2022) Sightings of extraordinary marine species in the SW Baltic Sea linked to saline water inflows. Journal of Sea Research 181, 102175, doi.org/10.1016/j.seares.2022.102175
Køhler LG, Huwer B, Pujolar JM, Werner M, Wikström K, Wernbo A, Ovegård M, Jaspers C (2022) Gelatinous macrozooplankton diversity and distribution dataset for the North Sea and Skagerrak/Kattegat during January-February 2021. Data in Brief, 44: 108493, doi.org/10.1016/j.dib.2022.108493
Leys SP, Matveev E, Suarez PA, Kahn AS, Asadzadeh SS, Kiørboe T, Larsen PS, Walther JH, Yahel G (2022) Models of flow through sponges must consider the sponge tissue. Nature 603: E23-E25. doi.org/10.1038/s41586-021-04380-8
Liu S, Tengstedt ANB, Jacobsen LMW, Pujolar JM, Jonsson B, Lobon-Cervià J, Bernatchez L, Hansen MM (2022) Genome-wide methylation in the panmictic European eel (Anguilla anguilla). Molecular Ecology, 31: 4286-4306, doi.org/10.1111/mec.16586
Lüskow F, Christiansen B, Chi X, Silva P, Neitzel P, Brooks ME, Jaspers C (2022) Distribution and biomass of gelatinous zooplankton in relation to an oxygen minimum zone and a shallow seamount in the Eastern Tropical North Atlantic Ocean. Marine Environmental Research 175, 105566, doi.org/10.1016/j.marenvres.2022.105566
Norin T (2022) Growth and mortality as causes of variation in metabolic scaling among taxa and taxonomic levels. Integrative and Comparative Biology 62, 1448-1459, doi.org/10.1093/icb/icac038
Olesen AJ, Ryderheim F, Krock B, Lundholm N, Kiørboe T (2022) Costs and benefits of predator-induced defense in a toxic diatom. Proc Roy Soc B doi.org/10.1098/rspb.2021.2735
Orenstein EC, Kiørboe T, Irisson J-O and more (2022) Machine learning techniques to characterize functional traits of plankton from image data. Limnol Oceanogr 67: 1647–1669, doi.org/10.1002/lno.12101
Pinti JK, Visser AW, Serra-Pompei C, Andersen KH, Ohman MD, Kiørboe T (2022) Fear and loathing in the pelagic: how the seascape of fear impacts the biological carbon pump. Limnol Oceanogr 67: 1238–1256, doi.org/10.1002/lno.12073
Pujolar JM, Bertolini F, Jacobsen MW (2022) Footprints of natural selection in North Atlantic eels: a review. Fishes, 7: 311. doi.org/10.3390/fishes7060311
Pujolar JM, Jacobsen MW, Bertolini F (2022) Comparative genomics and signatures of selection in North Atlantic eels. Marine Genomics, 62: 100933, doi.org/10.1016/j.margen.2022.100933
Pujolar JM, Limborg MT, Ehrlich M, Jaspers C (2022) High throughput SNP chip as cost effective new monitoring tool for assessing invasion dynamics in the comb jelly Mnemiopsis leidyi. Frontiers in Marine Science, doi.org/10.3389/fmars.2022.1019001
Rigby K, Kinnby A, Grønning J, Ryderheim F, Cervin G, Berdan E, Selander E (2022). Species specific responses to grazing and acidification in phytoplankton – winners and losers in a changing world. Front. Mar. Sci. 9: 875858, doi.org/10.3389/fmars.2022.875858
Roche DG, Raby GD, Norin T, Ern R, Scheuffele H, Skeeles M, Morgan R, Andreassen AH, Clements J, Louissaint S, Jutfelt F, Clark TD, Binning SA (2022) Paths towards greater consensus building in experimental biology. Journal of Experimental Biology 225, jeb243559, doi.org/10.1242/jeb.243559
Rode M, Bioue A, Miano F, Bruus H, Kiørboe T, Andersen A (2022) Acoustic Tethering of Microorganisms, Journal of Experimental Biology 225, jeb244089, 7 pages. doi.org/10.1242/jeb.244089
Rode M, Kiørboe T, Andersen A. (2022) Feeding flow and membranelle filtration in ciliates. Physical Review Fluids 7, 023102, 18 pages (2022). doi.org/10.1103/PhysRevFluids.7.023102
Ryderheim F, Grønning J, Kiørboe T (2022) Thicker shells reduce copepod grazing on diatoms. Limnol Oceanogr Lett. doi.org/10.1002/lol2.10243
Ryderheim F, Hansen PJ, Kiørboe T (2022) Predator field and colony morphology determine the defensive benefit of colony formation in marine phytoplankton. Front. Mar. Sci. 9: 829419, doi.org/10.3389/fmars.2022.829419
Schiettekatte NMD, Conte F, French B, Brandl SJ, Fulton CJ, Mercière A, Norin T, Villéger S, Parravicini V (2022) Combining stereo-video monitoring and physiological trials to estimate reef fish metabolic demands in the wild. Ecology and Evolution 12, e9084. doi.org/10.1002/ece3.9084
Serra-Pompei C, Ward BA, Pinti J, Visser AW, Kiørboe T, Andersen KH (2022) Linking plankton size spectra and community composition to carbon export and its efficiency. Global Biogeochemical Cycles, 36, e2021GB007275. doi.org/10.1029/2021GB007275
Suzuki-Tellier S, Andersen A, Kiørboe T (2022) Mechanisms and fluid dynamics of foraging in heterotrophic nanoflagellates, Limnology and Oceanography 67, 1287-1298. doi.org/10.1002/lno.12077
Thygesen UH, Mazuryn M (2022) Ideal free flows of optimal foragers: Vertical migrations in the ocean. Theor Ecol 15, 213–224, doi.org/10.1007/s12080-022-00538-w
van Denderen PD, Törnroos A, Sciberras M, Hinz H, Friedland R, Lasota R, Mangano MC, Robertson C, Valanko S, Hiddink JG (2022) Effects of bottom trawling and hypoxia on benthic invertebrate communities. Marine Ecology Progress Series, 694, 13-27 doi.org/10.3354/meps14094
Zempléni A, Hansen BW, Kiørboe T, Ryderheim F (2022) Resolving the paradox of the ambush feeding cyclopoid copepod Apocyclops royi being microphageous. J.Plankton Res, doi.org/10.1093/plankt/fbac040

2021

Andersen NG, Neuenfeldt S, Bogstad B, Andersen KH, Beyer JE (2021) Nutritional status determines apparent assimilative capacity and functional response of marine predatory fish. ICES J. Mar. Sci. 78(10) 3615–3624, doi.org/10.1093/icesjms/fsab197
Chakraborty S, Andersen KH, Visser AW, Inomura K, Follows MJ, Riemann L (2021) Quantifying nitrogen fixation by heterotrophic bacteria in sinking marine particles. Nature Communications 12: 4085, doi.org/10.1038/s41467-021-23875-6
Denéchère, R., Denderen, P. D. V., & Andersen, K. H. (2021). Deriving population scaling rules from individual-level metabolism and life history traits. The American Naturalist, doi.org/10.1086/718642
Henriksen O, Rindorf A, Brooks ME, Lindegren M, van Deurs M (2021) Temperature and body size affect recruitment and survival of sandeel across the North Sea. ICES Journal of Marine Science, doi.org/10.1093/icesjms/fsaa165
Jacobsen MW, Jensen NW, Nygaard R, Præbel K, Jónson B, Nielsen NH, Pujolar JM, Fraser DJ, Bernatchez L, Hansen MM (2021) A melting pot in the Arctic: Analysis of mitogenome variation in Arctic char (Salvelinus alpinus) reveals a 1000‐km contact zone between highly divergent lineages. Ecology of Freshwater Fish, doi.org/10.1111/eff.12633
Jaspers C, Bezio N, Hinrichsen H-H (2021) Diversity and physiological tolerance of native and invasive jellyfish/ctenophores along the extreme salinity gradient of the Baltic Sea. Diversity 13(2) 57, doi.org/10.3390/d13020057
Jaspers C, Ehrlich M, Pujolar JM, Kunzel S, Bayer T, Limborg MT, Lombard F, Browne WE, Stefanova K, Reusch TBH (2021) Invasion genomics uncover contrasting scenarios of genetic diversity in a widespread marine invader. Proceedings of the National Academy of Sciences USA, 118: e2116211118, doi.org/10.1073/pnas.2116211118
Kiørboe T, Thomas M (2021) Reply to Letten and Yamamichi: A rescue at the cost of falsifiability. PNAS 118 (5) e2025720118; doi.org/10.1073/pnas.2025720118
Kragesteen T, Simonsen K, Visser AW, Andersen KH (2021) Estimation of external infection pressure and salmon-louse population growth rate in Faroese salmon farms. Aquaculture Environment Interactions 13: 21-32. doi.org/10.3354/aei00386
Mazor T, Pitcher R, Rochester W, Kaiser M, Hiddink J, Jennings S, Amoroso R, McConnaughey R, Rijnsdorp AD, Parma A, Suuronen P, Collie J, Sciberras M, Atkinson L, Durholtz D, Ellis J, Bolam S, Schratzberger M, Couce E, Eggleton J, Garcia C, Kainge P, Paulus S, Kathena J, Gogina M, van Denderen PD, Keller A, Horness B, Hilborn R (2021) Trawl fishing impacts on the status of seabed fauna in diverse regions of the globe, Fish and Fisheries, 22: 72-86, doi.org/10.1111/faf.12506
Moran NP, Sánchez‐Tójar A, Schielzeth H, Reinhold K (2020) Poor nutritional condition promotes high‐risk behaviours: a systematic review and meta‐analysis. Biological Reviews, 96(1), 269-288. doi.org/10.1111/brv.12655
Nielsen LT, Kiørboe T (2021) Foraging trade-offs, flagellar arrangements, and flow architecture in planktonic protists. PNAS 118 (3) e2009930118, doi.org/10.1073/pnas.2009930118
Pepper RE, Riley EE, Baron M, Hurot T, Nielsen LT, Koehl MAR, Kiørboe T, Andersen A (2021) The effect of external flow on the feeding currents of sessile microorganisms, Journal of the Royal Society Interface 18, doi.org/10.1098/rsif.2020.0953
Pinti J, Andersen KH, Visser AW (2021) Co-adaptive behavior of interacting populations in a habitat selection game significantly impacts ecosystem functions. Journal of Theoretical Biology, doi.org/10.1016/j.jtbi.2021.110663
Pinti J, DeVries T, Norin T, Serra-Pompei C, Proud R, Siegel DA, Kiørboe T, Petrik CM, Andersen KH, Brierley AS, Visser AW (2021) Metazoans, migrations, and the ocean’s biological carbon pump. BioRxiv, doi.org/10.1101/2021.03.22.436489
Pujolar JM, Blom MPK, Reeve AJ, Kennedy JD, Marki PZ, Korneliussen TS, Freeman BG, Sam K, Linck E, Haryoko T, Iova B, Koane B, Maiah G, Paul L, Irestedt M, Jønsson KA (2021) The formation of avian montane diversity across barriers and along elevational gradients. Nature Communications 13: 268, doi.org/10.1038/s41467-021-27858-5
Ryderheim F, Selander E, Kiørboe T (2021) Predator-induced defence in a dinoflagellate generates benefits without direct costs. The ISME Journal, doi.org/10.1038/s41396-021-00908-y
Serra-Pompei C, Ward BA, Pinti J, Visser AW, Kiørboe T, Andersen KH (2021) Zooplankton trophic dynamics drive carbon export efficiency. BioRxiv, doi.org/10.1101/2021.03.08.434455
Soudijn FH, van Denderen PD, Heino M, Dieckmann U, de Roos AM (2021) Harvesting forage fish can prevent fishing-induced population collapses of large piscivorous fish. Proceedings of the National Academy of Sciences, 118: e1917079118, doi.org/10.1073/pnas.1917079118
van Denderen PD, Petrik CM, Stock CA, Andersen KH (2021) Emergent global biogeography of marine fish food webs. Global Ecology and Biogeography 30: 1822-1834, doi.org/10.1111/geb.13348
Xu N, Delius GW, Zhang L, Thygesen UH, Andersen KH (2021): Spatial drivers of instability in marine size-spectrum ecosystems. Journal of Theoretical Biology 517: 110631, doi.org/10.1016/j.jtbi.2021.110631

2020

Andersen A, Kiørboe T (2020) The effect of tethering on the clearance rate of suspension-feeding plankton, Proceedings of the National Academy of Sciences 117, 30101-30103. doi.org/10.1073/pnas.2017441117
Andersen KH (2020) Size-based theory for fisheries advice. ICES Journal of Marine Science 77(7-8) 2445-2455, Issue section: Food For Thought, doi.org/10.1093/icesjms/fsaa157
Arias A, Saiz E, Tiselius P, Calbet A (2020) Trophic interactions and diel feeding rhythms of microzooplankton in a productive Swedish Fjord. ICES Journal of Marine Science 77: 2718-2728. doi.org/10.1093/icesjms/fsaa137
Asadzadeh SS, Kiørboe T, Larsen PS, Leys SP, Yahel G, Walther JH (2020) Hydrodynamics of sponge pumps and evolution of the sponge body plan. Elife. 2020 Nov 30;9:e61012, doi.org/10.7554/eLife.61012
Brander K, Kiørboe T (2020) Decreasing phytoplankton size adversely affects ocean food chains. Global Change Biology, 26: 5356–5357, doi.org/10.1111/gcb.15216
Cadier M, Hansen AN, Andersen KH, Visser AW (2020) Competition between vacuolated and mixotrophic unicellular plankton. Journal of Plankton Research 42(4): 425-439, doi.org/10.1093/plankt/fbaa025
Chakraborty S, Cadier M, Visser A, Bruggeman J, Andersen KH (2020). Latitudinal variation in plankton traits and ecosystem function. Global Biogeochemical Cycles 34(8), doi.org/10.1029/2020GB006564
Färber L, van Gemert R, Langangen Ø, Durant JM, Andersen KH (2020) Population variability under stressors is dependent on body mass growth and asymptotic body size. Royal Society Open Science 7(2), doi.org/10.1098/rsos.192011
Gompper G, Winkler RG, Speck T, Solon A, Nardini C, Peruani F, Löwen H, Golestanian R, Kaupp UB, Alvarez L, Kiørboe T, Lauga E, Poon WCK, DeSimone A, Muiños-Landin S, Fischer A, Söker NA, Cichos F, Kapral R, Gaspard P, Ripoll M, Sagues F, Doostmohammadi A, Yeomans JM, Aranson IS, Bechinger C, Stark H, Hemelrijk CK, Nedelec FJ, Sarkar T, Aryaksama T, Lacroix M, Duclos G, Yashunsky V, Silberzan P, Arroyo M, Kale S (2020) The 2020 Motile Active Matter Roadmap. J Physics: Condensed Matter. 32: 193001. doi.org/10.1088/1361-648X/ab6348
Grønning J, Kiørboe T (2020) Diatom defence: Grazer induction and cost of shell-thickening. Funct Ecol 34(9): 1790-1801, doi.org/10.1111/1365-2435.13635
He J, Lange J, Marinos G, Bathia J, Harris D, Soluch R, Vaibhvi V, Deines P, Hassani MA, Wagner K-S, Zapien-Campos R, Jaspers C, Sommer F (2020) Advancing our functional understanding of host-microbiota interactions: A need for new types of studies. BioEssays 42(2): 1900211, 1-5, doi.org/10.1002/bies.201900211
Ho P-C, Chang C-W, Shiah F-K, Wang P-L, Hsieh C-H, Andersen KH (2020) Body size, light intensity and nutrient supply determine plankton stoichiometry in mixotrophic plankton food webs. American Naturalist 195(4) E100-E110, doi.org/10.1086/707394
Horwitz R, Norin T, Watson S-A, Pistevos JCA, Beldade R, Hacquart S, Gattuso J-P, Rodolfo-Metalpa R, Vidal-Dupiol J, Killen SS, Mills SC (2020) Near-future ocean warming and acidification alter foraging behaviour, locomotion, and metabolic rate in a circumtropical keystone marine mollusc. Scientific Reports 15, 5461. doi.org/10.1038/s41598-020-62304-4
Jaspers C, Weiland-Bräuer N, Rühlemann MC, Baines JF, Schmitz RA, Reusch TBH (2020) Differences in the microbiota of native and non-indigenous gelatinous zooplankton organisms in a low saline environment. Science of the Total Environment 734, 139471, doi.org/10.1016/j.scitotenv.2020.139471
Kiørboe T (2020) Havets økologi på formel. Carlsbergfondets Årsskrift 2020: 16-19. Aarsskrift/2020/Thomas-Kioerboe_Havets-oekologi-paa-formel
Kiørboe T, Grønning J (2020) Et vandigt våbenkapløb. Aktuel Naturvidenskab 5: 20-22. Aktuelnaturvidenskab-Et-vandigt-vaabenkaploeb
Kiørboe T, Thomas M (2020) Heterotrophic eukaryotes show a slow-fast continuum, not a gleaner-exploiter trade-off. PNAS 117(40) 24893-24899, doi.org/10.1073/pnas.2008370117
Lindegren M, Rindorf A, Norin T, Johns D, van Deurs M (2020) Climate- and density-dependent regulation of fish growth throughout ontogeny: North Sea sprat as a case study. ICES Journal of Marine Science 77, 3138-3152, doi.org/10.1093/icesjms/fsaa218
Maureaud A, Andersen KH, Zhang L, Lindegren M (2020) Trait-based food web model reveals the underlying mechanisms of biodiversity-ecosystem functioning relationships. Journal of Animal Ecology 89(6): 1497-1510, doi.org/10.1111/1365-2656.13207
Maureaud A, Frelat R, Pécuchet L, Shackell N, Mérigot B, Pinsky ML, Amador K, Anderson SC, Arkhipkin A, Auber A (and many more) (2020) Are we ready to track climate‐driven shifts in marine species across international boundaries? ‐ A global survey of scientific bottom trawl data. Global Change Biology 27(2), doi.org/10.1111/gcb.15404
Neuenfeldt S, Bartolino V, Orio A, Andersen KH, Andersen NG, Niiranen S, Bergström U, Ustups D, Kulatska N, Casini M (2020) Feeding and growth of Atlantic cod (Gadus morhua L.) in the eastern Baltic Sea under environmental change. ICES Journal of Marine Science 77(2) 624-632. doi.org/10.1093/icesjms/fsz224
Nielsen JH, Pedersen CV, Kiørboe T, Nikolajsen T, Brydegaard M, Rodrigo PJ (2020) Dual-band fluorosensor for discriminating non-eating from algae-eating zooplankton in aquatic environments. OSA Continuum: 3(7): 1730-1738, doi.org/10.1364/OSAC.389089
Norin T, Speers-Roesch B (2020) Chapter 10 – Metabolism. In: The Physiology of Fishes, 5th ed. (Currie S & Evans DE, Eds.). CRC Press, Boca Raton, USA. doi.org/10.1201/9781003036401
Olivares M, Tiselius P, Calbet A, Saiz E (2020) Non-lethal effects of the predator Meganyctiphanes norvegica and influence of seasonal photoperiod and food availability on the diel feeding behaviour of the copepod Centropages typicus. Journal of Plankton Research 42: 742-751. doi.org/10.1093/plankt/fbaa051
Petersen JK, Behrens J, van Deurs M, Dinesen G, Jaspers C, Møller LF, Plet-Hansen KS (2020) Contribution to press factor report for the Danish Ministry (Miljøstyrelsen) concerning the impact of non-indigenous species on the Limfjorden ecosystem, with expert judgement for impact assessment of the invasive comb jelly Mnemiopsis leidyi. Title: Andre presfaktorer end næringsstoffer og klimaforandringer – vurdering af de invasive arter amerikansk ribbegople og sortmundet kutling. Rapport til Miljøstyrelsen. DTU-Aqua rapport 365-2020: 1-35, ISBN 978-87-7481-288-3, researchgate.net/publication/341452465
Petrik CM, Stock CA, Andersen KH, van Denderen PD, Watson JR (2020) Large pelagic fish are most sensitive to climate change despite pelagification of ocean food webs. Frontiers in Marine Science 7: 588482, doi.org/10.3389/fmars.2020.588482
Pinti J, Celani A, Thygesen UH, Mariani P (2020) Optimal navigation and behavioural traits in oceanic migrations. Theoretical Ecology 13(4): 583-593. doi.org/10.1007/s12080-020-00469-4
Pomati F, Shurin JB, Andersen KH, Tellenbach C, Barton AD (2020): Interacting temperature, nutrients and zooplankton grazing control phytoplankton size-abundance relationships in eight Swiss lakes. Frontiers in Microbiology, doi.org/10.3389/fmicb.2019.03155
du Pontavice H, Gascuel D, Reygondeau G, Maureaud A, Cheung W (2020) Climate change undermines the global functioning of marine food webs. Global Change Biology 26(3), doi.org/10.1111/gcb.14944
Rijnsdorp AD, Hiddink JG, van Denderen PD, Hintzen NT, Eigaard OR, Valanko S, Bastardie F, Bolam SG, Boulcott P, Egekvist J, Garcia C, van Hoey G, Jonsson P, Laffargue P, Nielsen JR, Piet GJ, Sköld M, van Kooten T (2020) Different bottom trawl fisheries have a differential impact on the status of the North Sea seafloor habitats. ICES Journal of Marine Science, 77(5): 1772-1786. doi.org/10.1093/icesjms/fsaa050
Roche DG, Amcoff M, Morgan R, Sundin J, Andreassen AH, Finnøen M, Lawrence MJ, Henderson E, Norin T, Speers-Roesch B, Brown C, Clark TD, Bshary R, Leung B, Jutfelt F, Binning SA (2020) Behavioural lateralization in a detour test is not repeatable in fishes. Animal Behaviour 16, 55-64. doi.org/10.1016/j.anbehav.2020.06.025
Rode M, Meucci G, Seegert K, Kiørboe T, Andersen A (2020) The effects of surface proximity and force orientation on the feeding flows of microorganisms on solid surfaces, Physical Review Fluids 5, 123104. doi.org/10.1103/PhysRevFluids.5.123104
Sánchez‐Tójar A, Moran NP, O’Dea RE, Reinhold K, Nakagawa S (2020) Illustrating the importance of meta‐analysing variances alongside means in ecology and evolution. Journal of Evolutionary Biology, 33(9), 1216-1223. doi.org/10.1111/jeb.13661
Serra-Pompei C, Soudijn F, Visser AW, Kiørboe T, Andersen KH (2020) A general size- and trait-based model of plankton communities. Progress in Oceanography (189) 102473, doi.org/10.1016/j.pocean.2020.102473
Svetlichny L, Larsen PS, Kiørboe T (2020) Kinematic and dynamic scaling of copepod swimming. Fluids 5: 68; doi.org/10.3390/fluids5020068
van Denderen PD, Bolam SG, Friedland R, Hiddink JG, Norén K, Rijnsdorp AD, Sköld M, Törnroos A, Virtanen EA, Valanko S (2020) Evaluating impacts of bottom trawling and hypoxia on benthic communities at the local, habitat, and regional scale using a modelling approach. ICES Journal of Marine Science 77: 278–289, doi.org/10.1093/icesjms/fsz219
van Denderen PD, Gislason H, Heuvel Jvd, Andersen KH (2020) Global analysis of fish growth rates shows weaker responses to temperature than metabolic predictions. Global Ecology and Biogeography 29(12) 2203-2213, doi.org/10.1111/geb.13189
van Deurs M, Brooks ME, Lindegren M, Henriksen O, Rindorf A (2020) Biomass limit reference points are sensitive to estimation method, time-series length and stock development. Fish and Fisheries. 22 (1):18-30, doi.org/10.1111/faf.12503
Visser AW, Brun P, Chakraborty S, Dencker TS, van Denderen PD, van Gemert R, van Someren Gréve H, Heilmann I, Holm MW, Jónasdóttir SH, Kenitz KM, Kiørboe T, Lindegren M, Mariani P, Nielsen LT, Pancic M, Payne M, Pécuchet L, Schnedler-Meyer NA, Thygesen UH, Törnroos A, Andersen KH (2020) Seasonal strategies in the world’s oceans. Progress in Oceanography 189: 102466, doi.org/10.1016/j.pocean.2020.102466
Wang W, Xu N, Zhang L, Andersen KH, Klaminder J (2020) Anthropogenic forcing of fish boldness and its impacts on ecosystem structure. Global Change Biology, doi.org/10.1111/gcb.15473
Weiland-Bräuer N, Prasse D, Brauer A, Jaspers C, Reusch TBH, Schmitz RA (2020) Cultivable microbiota associated with Aurelia aurita and Mnemiopsis leidyi. Microbiology Open 9 (9), e1094, doi.org/10.1002/mbo3.1094

2019

Andersen A, Dölger J (2019) Planktonic encounter rates with non-spherical encounter zones. Journal of The Royal Society Interface 16 (156), doi.org/10.1098/rsif.2019.0398
Andersen KH (2019): Monograph: Fish Ecology, Evolution, and Exploitation - a new theoretical synthesis. Princeton University Press.
Andersen KH, Jacobsen NS, van Denderen PD (2019): Limited impact of big fish mothers for population replenishment. Canadian Journal of Fisheries and Aquatic Sciences, doi.org/10.1139/cjfas-2018-0354
Asadzadeh SS, Nielsen LT, Andersen A, Dölger J, Kiørboe T, Larsen PS, Walther JH (2019) Hydrodynamic functionality of the lorica in choanoﬂagellates. J Roy Soc Interface 16: 20180478. doi.org/10.1098/rsif.2018.0478
Baktoft H, Gjelland KØ, Okland F, Rehage JS, Corujo RS, Viadero N, Thygesen UH (2019) Opening the black box of high resolution fish tracking using yaps. bioRxiv. doi.org/10.1101/2019.12.16.877688
Beukhof, E, Dencker, TS, Palomares MLD, Maureaud A (2019) A trait collection of marine fish species from North Atlantic and Northeast Pacific continental shelf seas. (Dataset) PANGAEA, doi.org/10.1594/PANGAEA.900866
Beukhof E, Dencker TS, Pecuchet L, Lindegren M (2019) Spatio-temporal variation in marine fish traits reveals community-wide responses to environmental change. Marine Ecology Progress Series 610: 205-222, doi.org/10.3354/meps12826
Beukhof E, Frelat R, Pecuchet L, Maureaud A, Dencker TS, Sólmundsson J, Punzón A, Primicerio R, Hidalgo M, Möllmann C, Lindegren M (2019) Marine fish traits follow fast-slow continuum across oceans. Sci Rep 9 17878 doi.org/10.1038/s41598-019-53998-2
Brun P, Stamieszkin K, Visser AW, Licandro P, Payne MR, Kiørboe T (2019) Climate change has altered zooplankton-fuelled carbon export in the North Atlantic. Nature Ecology & Evolution 3: 416-423, doi.org/10.1038/s41559-018-0780-3
Cadier M, Andersen KH, Visser AW, Kiørboe T (2019) Competition-defense trade-off increases the diversity of microbial plankton communities and dampens trophic cascades. Oikos doi.org/10.1111/oik.06101
Chakraborty S, Pančić M, Andersen KH, Kiørboe T (2019) The cost of toxin production in phytoplankton: the case of PST producing dinoflagellates: The ISME Journal 13: 64-75 doi.org/10.1038/s41396-018-0250-6
Dölger J, Kiørboe T, Andersen A (2019) Dense Dwarfs versus Gelatinous Giants: The Trade-Offs and Physiological Limits Determining the Body Plan of Planktonic Filter Feeders. American Naturalist 194, (2): E30-E40. doi.org/10.1086/703656
Fontana S, Thomas MK, Reyes M, Pomati F (2019) Light limitation increases multidimensional trait evenness in phytoplankton populations. The ISME Journal, doi.org/10.1038/s41396-018-0320-9
Hansen AN, Visser AW (2019) The seasonal succession of optimal diatom traits. Limnology and Oceanography, doi.org/10.1002/lno.11126
Henseler C, Nordström MC, Törnroos A, Snickars M, Pecuchet L, Lindegren M, Bonsdorff E (2019) Coastal habitats and their importance for the diversity of benthic communities: A species- and trait-based approach, Estuarine, Coastal and Shelf Science, 226, doi.org/10.1016/j.ecss.2019.106272
Ho Pei-Chi, Chang Chun-Wei, Shiah Fuh-Kwo, Wang Pei-Ling, Hsieh Chih-hao, Andersen KH (2019) Body size, light intensity, and nutrient supply determine plankton stoichiometry in mixotrophic plankton food webs. The American Naturalist, doi.org/10.1086/707394
Holm MW, Rodriguez-Torres R, Hansen BW, Almeda R (2019) Influence of behavioral plasticity and foraging strategy on starvation tolerance of planktonic copepods. Journal of Experimental Marine Biology and Ecology 511: 19-27. doi.org/10.1016/j.jembe.2018.11.002
Horne, C, Hirst A, Almeda R, Atkinson D, Kiørboe T (2019) Rapid shifts in the thermal sensitivity of growth but not development rate causes temperature-size response variability during ontogeny in arthropods. Oikos, doi.org/10.1111/oik.06016
Jutfelt F, Roche DG, Clark TD, Norin T, Binning SA, Speers-Roesch B, Amcoff M, Morgan R, Andreassen AH, Sundin J (2019) Brain cooling marginally increases acute upper thermal tolerance in Atlantic cod. Journal of Experimental Biology 222, jeb208249, doi.org/10.1242/jeb.208249
Kiørboe T, Andersen KH (2019) Nutrient affinity, half saturation constants, and the cost of toxin production in dinoflagellates. Ecol Lett doi.org/10.1111/ele.13208
Kragesteen TJ, Simonsen K, Visser AW, Andersen KH (2019) Optimal salmon lice treatment threshold and tragedy of the commons in salmon farm networks. Aquaculture 512, 734329. doi.org/10.1016/j.aquaculture.2019.734329
Kristensen ML, Pedersen MW, Thygesen UH, Del Villar-Guerra D, Baktoft H, Aarestrup K (2019) Migration routes and habitat use of a highly adaptable salmonid (sea trout, Salmo trutta) in a complex marine area. Animal Biotelemetry 7, pages: 23. doi.org/10.1186/s40317-019-0185-3
Lindegren M, Thomas MK, Jónasdóttir SH, Nielsen TG, Munk P (2019) Environmental niche separation promotes coexistence among ecologically similar zooplankton species – North Sea copepods as a case study, Limnology and Oceanography. doi.org/10.1002/lno.11322
Mariani P, Quincoces I, Haugholt KH, Chardard Y, Visser AW, Yates C, Piccinno G, Reali G, Risholm P, Thielemann JT (2019) Range-Gated Imaging System for Underwater Monitoring in Ocean Environment. Sustainability 11, 1: 1-13. 162; doi.org/10.3390/su11010162
Maureaud A, Hodapp D, van Denderen P, Hillebrand H, Gislason H, Spaanheden Dencker T, Beukhof E, Lindegren M (2019) Biodiversity–ecosystem functioning relationships in fish communities: biomass is related to evenness and the environment, not to species richness. Proceedings of the Royal Society B: Biological Sciences 286 (1906) doi.org/10.1098/rspb.2019.1189
McLean M, Mouillot D, Lindegren M, Villeger S, Engelhard G, Murgier J, Auber A (2019) Fish communities diverge in species but converge in traits over three decades of warming. Global Change Biology, doi.org/10.1111/gcb.14785
Neubauer P, Andersen KH (2019) Thermal performance of fish is explained by an interplay between physiology, behaviour, and ecology. Conservation Physiology 7 (1) doi.org/10.1093/conphys/coz025
Nielsen JH, Pedersen C, Kiørboe T, Nikolajsen M, Brydegaard M, Rodrigo PJ (2019) Investigation of autofluorescence in zooplankton for use in classification of larval salmon lice. Applied optics 286:7022-7027. doi.org/10.1364/AO.58.007022
Norin T, Metcalfe NB (2019) Ecological and evolutionary consequences of metabolic rate plasticity in response to environmental change. Phil. Trans. R. Soc. B 374, 20180180, 9 p., doi.org/10.1098/rstb.2018.0180
Norin T, Canada P, Bailey JA, Gamperl AK (2019) Thermal biology and swimming performance of Atlantic cod (Gadus morhua) and haddock (Melanogrammus aeglefinus). PeerJ 7:e7784, doi.org/10.7717/peerj.7784
Pančić M, Torres RR, Almeda R, Kiørboe T (2019) Silicified cell walls as a defensive trait in diatoms. Proc. R. Soc. B 286: 20190184. doi.org/10.1098/rspb.2019.0184
Pecuchet L, Lindegren M, Kortsch S, Całkiewicz J, Jurgensone I, Margonski P, Otto S, Putnis I, Strāķe S, Nordström MC (2019) Spatio-temporal dynamics of multi-trophic communities reveal ecosystem-wide functional reorganization. Ecography, doi.org/10.1111/ecog.04643
Petrik CM, Stock CA, Andersen KH, van Denderen PD, Watson JR (2019) Bottom-up drivers of global patterns of demersal, forage, and pelagic fishes. Progress in Oceanography 176, 102124 doi.org/10.1016/j.pocean.2019.102124
Pinti J, Kiørboe T, Thygesen U, Visser A (2019) Trophic interactions drive the emergence of diel vertical migration patterns: a game-theoretic model of copepod communities. Proceedings of the Royal Society B: Biological Sciences, doi.org/10.1098/rspb.2019.1645
Prowe AEF, Visser AW, Andersen KH, Chiba S, Kiørboe T (2019) Biogeography of zooplankton feeding strategy. Limnol Oceanogr. doi.org/10.1002/lno.11067
Rist S, Baun A, Almeda R, Hartmann NB (2019) Ingestion and effects of micro- and nanoplastics in blue mussel (Mytilus edulis) larvae. Marine Pollution Bulletin 140: 423-430, doi.org/10.1016/j.marpolbul.2019.01.069
Serra-Pompei C, Hagstrom GI, Visser AW, Andersen KH (2019) Resource limitation determines temperature response of unicellular plankton communities. Journal of Limnology and Oceanography, doi.org/10.1002/lno.11140
Sguotti C, Otto SA, Frelat R, Langbehn TJ, Ryberg MP, Lindegren M, Durant JM, Stenseth NC, Möllmann C (2019) Catastrophic dynamics limit Atlantic cod recovery. Proc. R. Soc. B 286: 20182877. doi.org/10.1098/rspb.2018.2877
Someren Gréve Hv, Kiørboe T, Almeda R (2019) Bottom-up behaviorally mediated trophic cascades in plankton food webs. Proc Roy Soc B. 201 81664. doi.org/10.1098/rspb.2018.1664
Svendsen MBS, Johansen JL, Bushnell PG, Skov PV, Norin T, Domenici P, Steffensen JF, Abe A (2019) Are all bony fishes oxygen regulators? Evidence for oxygen regulation in a putative oxygen conformer, the swamp eel Synbranchus marmoratus. J. Fish Biol. 94: 178-182, doi.org/10.1111/jfb.13861
Thambithurai D, Crespel A, Norin T, Rácz A, Lindström J, Parsons K, Killen SS (2019) Hypoxia alters vulnerability to capture and the potential for trait-based selection in a scaled-down trawl fishery. Conservation Physiology, coz082, doi.org/10.1093/conphys/coz082
Tunca S, Lindegren M, Ravn-Jonsen L, Lindroos M (2019) Cooperative Fisheries Outperform Non-cooperative Ones in the Baltic Sea Under Different Climate Scenarios. Frontiers in Marine Science. 6:622. doi.org/10.3389/fmars.2019.00622

2018

Almeda R, van Someren Gréve H, Kiørboe T (2018) Prey perception mechanism determines maximum clearance rates of planktonic copepods. Limnol Oceanogr, doi.org/10.1002/lno.10969
Amato A, Sabatino V, Nylund G, Bergkvist J, Basu S, Anderson M,Sanges R, Godhe A, Kiørboe T, Selander E, Ferrante MI (2018) Grazer-induced transcriptomic and metabolomic response of the chain-forming diatom Skeletonema marinoi. ISME Journal, doi.org/10.1038/s41396-018-0094-0
Andersen KH, Marty L, Arlinghaus R (2018) Evolution of boldness and life-history in response to selective harvesting. Canadian Journal of Fisheries and Aquatic Sciences 75(2): 271-281, doi.org/10.1139/cjfas-2016-0350
Cornwell LE, Findlay HS, Lewis C, Fileman ES, Smyth TJ, Hirst AG, Bruun JT, McEvoy AJ, Widdicombe CE, Castellani C, Atkinson A (2018) Seasonality of Oithona similis and Calanus helgolandicus reproduction and abundance: contrasting responses to environmental variation at a shelf site. Journal of Plankton Research, doi.org/10.1093/plankt/fby007
van Denderen PD, Lindegren M, MacKenzie BR, Watson R, Andersen KH. (2018) Global patterns in marine predatory fish. Nature Ecology & Evolution 2, 65-70, doi.org/10.1038/s41559-017-0388-z
van Gemert R, Andersen KH (2018) Implications of late-in-life density-dependent growth for fishery size-at-entry leading to maximum sustainable yield. ICES Journal of Marine Science 75(4): 1296-1305, doi.org/10.1093/icesjms/fsx236
van Gemert R, Andersen KH (2018) Challenges to fisheries advice and management due to stock recovery, ICES Journal of Marine Science 75(6): 1864-1870, doi.org/10.1093/icesjms/fsy084
Glaser M, Ferse SC, Neil M, Plass-Johnson J, Satari D, Teichberg M, Reuter H (2018) Breaking resilience for a sustainable future: Thoughts for the anthropocene. Frontiers in Marine Science, doi.org/10.3389/fmars.2018.00034
Heilmann IT, Thygesen UH, Sørensen MP (2018) Spatio-temporal pattern formation in predator-prey systems with fitness taxis. Ecological Complexity 34: 44-57, doi.org/10.1016/j.ecocom.2018.04.003
Holm MW, Kiørboe T, Brun P, Licandro P, Almeda R, Hansen BW (2018) Resting eggs in free living marine and estuarine copepods. J Plankton Res 40(1): 2-15, doi.org/10.1093/plankt/fbx062
Holm MW, Rodriguez Torres R, Hansen BW, Almeda R (2018) Sex-specific starvation tolerance of copepods with different foraging strategies. Journal of Plankton Research 40(3): 284-294, doi.org/10.1093/plankt/fby006
Horne CR, Hirst AG, Atkinson D (2018) Insect temperature-body size trends common to laboratory, latitudinal and seasonal gradients are not found across altitudes. Functional Ecology 32(4): 948-957, doi.org/10.1111/1365-2435.13031
Jaspers C, Marty L, Kiørboe T (2018) Selection for life-history traits to maximize population growth in an invasive species. Global Change Biology 24:1164-1174, doi.org/10.1111/gcb.13955
Kenitz KM, Visser AW, Ohman MD, Landry MR, Andersen KH (2018): Community trait distribution across environmental gradients. Ecosystems 22: 968-980, doi.org/10.1007/s10021-018-0314-5
Kenitz KM, Visser AW, Andersen KH (2018) Response to comment ‘What drives plankton seasonality in a stratifying shelf sea? Some competing and complementary theories’. Limnol. Oceanogr. 63, 2885-2886, doi.org/10.1002/lno.11034
Kiørboe T, Saiz E, Tiselius P, Andersen KH (2018) Adaptive feeding behavior and functional responses in zooplankton. Limnol Oceanogr 63: 308-321, doi.org/10.1002/lno.10632
Kiørboe T, Visser AW, Andersen KH (2018) A trait-based approach to ocean ecology. ICES J Mar Sci 75 (6): 1849-1863, doi.org/10.1093/icesjms/fsy090
Kragesteen TJ, Simonsen K, Visser AW, Andersen KH (2018) Identifying Salmon Lice Transmission Characteristics between Faroese Salmon Farms. Aquaculture Environment Interactions 10: 49-60, doi.org/10.3354/aei00252
Lindegren M, Brander K (2018) Adapting Fisheries and Their Management to Climate Change: A Review of Concepts, Tools, Frameworks, and Current Progress Toward Implementation. Reviews in Fisheries Science & Aquaculture, 26(3): 400-415, doi.org/10.1080/23308249.2018.1445980
Lindegren M, Checkley Jr DM, Koslow JA, Goericke R, Ohman MD (2018) Climate-mediated changes in marine ecosystem regulation during El Niño. Glob Change Biol. 24(2):796–809, doi.org/10.1111/gcb.13993
Lindegren M, Holt BG, MacKenzie BR, Rahbek C (2018) A global mismatch in the protection of multiple marine biodiversity components and ecosystem services. Nature Scientific Reports 8: 4099, doi.org/10.1038/s41598-018-22419-1
Lindemann C, Visser A, Mariani P (2018) Correction to 'Dynamics of phytoplankton blooms in turbulent vortex cells'. Journal of the Royal Society, Interface, 15 (138), doi.org/10.1098/rsif.2017.0951
Lundholm N, Krock B, John U, Skov J, Cheng J, Pančić M, Wohlrab S, Rigby K, Nielsen TG, Selander E, and Harðardóttir S (2018) Induction of domoic acid-production in diatoms - types of grazers and diatoms are important. Harmful Algae 79: 64-73, doi.org/10.1016/j.hal.2018.06.005
Maud JL, Hirst AG, Atkinson A, Lindeque PH, McEvoy AJ (2018) Mortality of Calanus helgolandicus: sources, differences between the sexes and consumptive and non-consumptive processes. Limnol Oceanogr 63(4): 1741-1761, doi.org/10.1002/lno.10805
McLean M, Mouillot D, Lindegren M, Engelhard G, Villéger S, Marchal P, Brind’Amour A, Auber A (2018). A climate-driven functional inversion of connected marine ecosystems. Current Biology 28: 3654-3660, doi.org/10.1016/j.cub.2018.09.050
Miesner AK, Payne MR (2018) Oceanographic variability shapes the spawning distribution of blue whiting (Micromesistius poutassou). Fisheries Oceanography, 27(6), 623-638, doi.org/10.1111/fog.12382
Olsson K, Andersen KH (2018) Cannibalism as a selective force on offspring size in fish. Oikos 127(9): 1264-1271, doi.org/10.1111/oik.04131
Pančić M, Kiørboe T (2018) Phytoplankton defence mechanisms: traits and trade-offs. Biological Reviews 93(2): 1269-1303, doi.org/10.1111/brv.12395
Pecuchet L, Reygondeau G, Cheung WWL, Licandro P, van Denderen PD, Payne M, Lindegren M (2018) Spatial distribution of life-history traits and their response to environmental gradients across multiple marine taxa. Ecosphere 9(10), doi.org/10.1002/ecs2.2460
Pinti J, Visser AW (2018) Predator-Prey Games in Multiple Habitats Reveal Mixed Strategies in Diel Vertical Migration. The American Naturalist 2019, doi.org/10.1086/701041
Plass-Johnson JG, Bednarz VN, Hill JM, Jompa J, Ferse SCA, Teichberg MC (2018) Contrasting responses in the niches of two coral reef herbivores along a gradient of habitat disturbance in the Spermonde Archipelago, Indonesia. Frontiers in Marine Science, doi.org/10.3389/fmars.2018.00032
Plass-Johnson JG, Ferse SC, Bednarz VN, Gärdes A, Heiden JP, Lukman M, Miñarro S, Schwieder H, Weiand L, Wild C, Reuter H, Teichberg M (2018) Spatio-temporal patterns in the coral reef communities of the Spermonde Archipelago, 2012-2014, II: Fish assemblages display structured variation related to benthic condition. Frontiers in Marine Science, doi.org/10.3389/fmars.2018.00036
Rijnsdorp AD, Bolam SG, Garcia C, Hiddink JG, Hintzen NT, van Denderen PD, van Kooten T (2018) Estimating sensitivity of seabed habitats to disturbance by bottom trawling based on the longevity of benthic fauna. Ecological Applications 28(5): 1302-1312, doi.org/10.1002/eap.1731
Riley EE, Das D, Lauga E (2018). Swimming of peritrichous bacteria is enabled by an elastohydrodynamic instability. Sci. Rep. 8: 10728, doi.org/10.1038/s41598-018-28319-8
Schnedler-Meyer NA, Kiørboe T, Mariani P (2018) Boom and bust: Life history, environmental noise, and the (un)predictability of jellyfish blooms. Frontiers in Marine Science doi.org/10.3389/fmars.2018.00257
Schnedler-Meyer NA, Pigolotti S, Mariani P (2018) Evolution of complex asexual reproductive strategies in jellyfish. The American Naturalist 192(1): 72-80, doi.org/10.1086/697538
Simó R, Saló V, Almeda R, Movilla J, Trepat I, Saiz E, Calbet A (2018) The quantitative role of microzooplankton grazing in dimethylsulfide (DMS) production in the NW Mediterranean. Biogeochemistry 141(2): 125-142, doi.org/10.1007/s10533-018-0506-2
Su Y, Lenau TA, Gundersen E, Kirkensgaard JJK, Maibohm C, Pinti J, Ellegaard M (2018) The UV filtering potential of drop-casted layers of frustules of three diatom species. Scientific reports, 8 (1), pp. 959, doi.org/10.1038/s41598-018-19596-4
Svetlichny L, Larsen PS, Kiørboe T (2018) Swim and fly. Escape strategy in neustonic and planktonic copepods. J Exp Biol, doi.org/10.1242/jeb.167262
Teichberg M, Ferse SC, Bednarz VN, Gärdes A, Heiden JP, Lukman M, Miñarro S, Schwieder H, Weiand L, Wild C, Reuter H, Plass-Johnson JG (2018) Spatio-temporal patterns in coral reef communities of the Spermonde Archipelago, 2012-2014, I: Comprehensive reef monitoring reveals two indices that reflect changes in reef health. Frontiers in Marine Science doi.org/10.3389/fmars.2018.00033
Thomas MK, Fontana S, Reyes M, Pomati F (2018) Quantifying cell densities and biovolumes of phytoplankton communities and functional groups using scanning flow cytometry, machine learning and unsupervised clustering. PLoS one 13(5), e0196225, doi.org/10.1371/journal.pone.0196225
Thomas MK, Fontana S, Reyes M, Kehoe M, Pomati F (2018) The predictability of a lake phytoplankton community, over time-scales of hours to years. Ecology Letters 21(5): 619-628, doi.org/10.1111/ele.12927
Thygesen UH, Patterson, TA (2018) Oceanic diel vertical migrations arising from a predator-prey game. Theoretical Ecology 12: 17-29, doi.org/10.1007/s12080-018-0385-0
Törnroos A, Pecuchet L, Olsson J, Gårdmark A, Blomqvist M, Lindegren M, Bonsdorff E (2018) Four decades of functional community change reveals gradual trends and low interlinkage across trophic groups in a large marine ecosystem. Global Change Biology 25 (4): 1235-1246, doi.org/10.1111/gcb.14552
Xu J, Kiørboe T (2018) Toxic dinoflagellates produce true grazer deterrents. Ecology 99 (10): 2240-2249, doi.org/10.1002/ecy.2479
Xu J, Nielsen LT, Kiørboe T (2018) Foraging response and acclimation of ambush feeding and feeding-current feeding copepods to toxic dinoflagellates. Limnol Oceanogr 63: 1449-1461, doi.org/10.1002/lno.10782

2017

Almeda R, van Someren Gréve H, Kiørboe T (2017) Behavior is a major determinant of predation risk in zooplankton. Ecosphere 8(2), doi.org/10.1002/ecs2.1668
Monograph: Andersen KH (2017) Fish and Fisheries - the size- and trait-based approach. Doctoral Thesis, Technical University of Denmark.
Commentary: Andersen KH, Gislason H (2017) Unplanned ecological engineering. PNAS 114(4): 634-635, doi.org/10.1073/pnas.1620158114
Baktoft H, Gjelland KØ, Økland F, Thygesen UH (2017). Positioning of aquatic animals based on time-of-arrival and random walk models using YAPS (Yet Another Positioning Solver). Scientific Reports 7(1), doi.org/10.1038/s41598-017-14278-z
Berge T, Chakraborty S, Hansen PJ, Andersen KH (2017): Modelling succession of key resource harvesting traits of mixotrophic plankton populations. The ISME Journal11: 212–223, doi.org/10.1038/ismej.2016.92
Brun P, Payne MR, Kiørboe T (2017) A trait database for marine copepods. Earth Syst Sci Data 9: 99–113, doi.org/10.5194/essd-9-99-2017
Chakraborty S, Nielsen LT, Andersen KH (2017) Trophic strategies of unicellular plankton. American Naturalist189(4) E77-E90, doi.org/10.1086/690764
Chakraborty S, Tiwari P, Sasmal S, Biswas S, Bhattacharya S, Chattopadhyay J (2017) Interactive effects of prey refuge and additional food for predator in a diffusive predator-prey system. Applied Mathematical Modelling 47: 128-140, doi.org/10.1016/j.apm.2017.03.028
Chakraborty S, Tiwari P, Sasmal S, Misra AK, Chattopadhyay J (2017) Effects of fertilizers used in agricultural fields on algal blooms. The European Physical Journal Special Topics 226(9): 2119-2133, doi.org/10.1140/epjst/e2017-70031-7
Dencker TS, Pecuchet L, Beukhof E, Richardson K, Payne MR, Lindegren M (2017) Temporal and spatial differences between taxonomic and trait biodiversity in a large marine ecosystem: causes and consequences. PLoS One, doi.org/10.1371/journal.pone.0189731
Dias JP, Fotedar S, Muenoz J, Hewitt MJ, Lukehurst S, Hourston M, Wellington C, Duggan R, Bridgwood S, Massam M, Aitken V, Lestang, P de, McKirdy S, Willan R, Kirkendale L, Giannetta J, Corsini-Foka M, Pothoven S, Gower F, Viard F, Buschbaum C, Scarcella G, Strafella P, Bishop MJ, Sullivan T, Buttino I, Madduppa H, Huhn M, Zabin CJ, Bacela-Spychalska K, Wójcik-Fudalewska D, Markert A, Maximov A, Kautsky L, Jaspers C, Kotta J, Pärnoja M, Robledo D, Tsiamis K, Küpper FC, Žuljevi A, McDonald JI, Snow M (2017) Establishment of a taxonomic and molecular reference collection to support the identification of species regulated by the Western Australian Prevention List for Introduced Marine Pests. Management of Biological Invasions 8 (2): 215-225, doi.org/10.3391/mbi.2017.8.2.09
Dölger J, Bohr T, Andersen A (2017) An analytical model of flagellate hydrodynamics. Physica Scripta 92: 044003 (9pp). doi.org/10.1088/1402-4896/aa6164
Dölger J, Nielsen LT, Kiørboe T, Andersen A (2017) Swimming and feeding of mixotrophic biflagellates. Sci. Rep. 7:39892, doi.org/10.1038/srep39892
Frelat R, Lindegren M, Dencker TS, Floeter J, Fock HO, Squotti C, Stäbler M, Otto SA, Möllmann C. (2017) Community ecologi in 3D: Tensor decomposition reveals spatio-temporal dynamics of large ecological communities. PLoS ONE 12(11): e0188205, doi.org/10.1371/journal.pone.0188205
Giakoumi S, Scianna C, Plass-Johnson JG, Micheli F, Grorud-Colvert K, Thiriet P, Claudet J, Di Carlo G, Di Franco A, Gaines SD, Garcia-Charton J, Lubchenco J, Reimer J, Sala E, Guidetti P (2017) Ecological effects of full and partial protection in the crowded Mediterranean Sea: a regional meta-analysis. Scientific Reports, 7: 8940, doi.org/10.1038/s41598-017-08850-w
Griffiths, J. R., Kadin, M., Nascimento, F. J. A., Tamelander, T., Törnroos, A., Bonaglia, S., Bonsdorff, E., Brüchert, V., Gårdmark, A., Järnström, M., Kotta, J., Lindegren, M., Nordström, M. C., Norkko, A., Olsson, J., Weigel, B., Žydelis, R., Blenckner, T., Niiranen, S. and Winder, M. (2017), The importance of benthic–pelagic coupling for marine ecosystem functioning in a changing world. Glob Change Biol, 23: 2179–2196, doi.org/10.1111/gcb.13642
Hirst AG, Lilley MKS, Glazier DS, Atkinson D (2017) Ontogenetic body-mass scaling of nitrogen excretion relates to body surface area in diverse pelagic invertebrates. Limnology & Oceanography 62: 311-319, doi.org/10.1002/lno.10396
Horne CR, Hirst AG*, Atkinson D (2017) Seasonal body size reductions with warming co-vary with major body size gradients in arthropod species. Proceedings of the Royal Society B 284 (1851),doi.org/10.1098/rspb.2017.0238 (*Communicating author when not first)
Jacobsen NS, Burgess M, Andersen KH (2017) Efficiency of fisheries is increasing at the ecosystem level. Fish and Fisheries18(2) 199-211, doi.org/10.1111/faf.12171
Kegler HF, Lukman M, Teichberg M, Plass-Johnson J, Hassenrück C, Wild C, Gärdes A (2017) Bacterial Community Composition and Potential Driving Factors in Different Reef Habitats of the Spermonde Archipelago , Indonesia. Frontiers in Microbiology 8: 1-14, doi.org/10.3389/fmicb.2017.00662
Kenitz K, Visser AW, Mariani P, Andersen KH (2017) Seasonal succession in zooplankton feeding traits reveals trophic trait cascade. Limnology and Oceanography 62(3) 1184-1197, doi.org/10.1002/lno.10494
Mariani P, Andersen KH, Lindegren M, MacKenzie BR (2017) Trophic impact of Atlantic bluefin tuna migrations in the North Sea. ICES Journal of Marine Science 74 (6): 1552-1560. doi.org/10.1093/icesjms/fsx027
Nielsen LT, Asadzadeh SS, Dölger J, Walther JH, Kiørboe T, Andersen A (2017) Hydrodynamics of microbial filter-feeding. PNAS 114 (35): 9373–9378, doi.org/10.1073/pnas.1708873114
Patursson EJ, Simonsen K, Visser AW, Patursson Ø. (2017). The effect of exposure on salmon lice (Lepeophtheirus salmonis) population dynamics in Faroese salmon farms. Aquaculture Environment Interactions 9: 33–43. doi.org/10.3354/aei00209
Payne MR, Hobday AJ, MacKenzie BR, Tommasi D, Dempsey DP, Fässler SMM, Haynie AC, Ji R, Liu G, Lynch PD, Matei D, Miesner AK, Mills KE, Strand KO, Villarino E (2017) Lessons from the first generation of marine ecological forecast products. Front Mar Sci 4, doi.org/10.3389/fmars.2017.00289
Pecuchet L, Lindegren M, Hidalgo M, Delgado M, Esteban A, Fock HO, Gil de Sola L, Punzon A, Solmundsson J, Payne MR. (2017) From traits to life history strategies: deconstructing fish community composition across European Seas. Global ecology and biogeography. 26(7): 812-822, doi.org/10.1111/geb.12587
Someren Gréve H van, Almeda R, Lindegren M, Kiørboe T (2017) Gender- specific feeding rates in planktonic copepods with different feeding behavior. J Plankton Res 39(4): 631-644, doi.org/10.1093/plankt/fbx033
Someren Gréve H van, Almeda R, Kiørboe T (2017) Motile behavior and predation risk in planktonic copepods. Limnol Oceanogr. 62(5): 1810–1824, doi.org/10.1002/lno.10535
Thygesen UH, Albertsen CM, Berg CW, Kristensen K, Nielsen A (2017). Validation of ecological state space models using the Laplace approximation. Environmental and Ecological Statistics 24(2): 317-339, doi.org/10.1007/s10651-017-0372-4
Traving SJ, Rowe O, Jakobsen NM, Sørensen H, Dinasquet J, Stedmon CA, Andersson A, Riemann L (2017) The effect of increased loads of dissolved organic matter on estuarine microbial composition and function. Frontiers in Microbiology 8 (351), doi.org/10.3389/fmicb.2017.00351
Visser AW, Grønning J, Jónasdóttir SH. (2017). Calanus hyperboreus and the lipid pump. Limnology and Oceanography 62(3): 1155-1165, doi.org/10.1002/lno.10492
Vu M, Hansen BW, Kiørboe T (2017) The constraints of high density production of the calanoid copepod Acartia tonsa Dana. J Plankton Res 39(6), 1028-1039, doi.org/10.1093/plankt/fbx056
Welti N, Striebel M, Ulseth AJ, Cross WF, DeVilbiss S, Glibert PM, Guo L, Hirst AG, Hood J, Kominoski JS, MacNeill KL, Mehring AS, Welter JR, Hillebrand H (2017) Bridging food webs, ecosystem metabolism, and biogeochemistry using ecological stoichiometry theory. Frontiers in Microbiology 8, doi.org/10.3389/fmicb.2017.01298
Xu J, Hansen PJ, Nielsen LT, Krock B, Tillmann U, Kiørboe T (2017) Distinctly different behavioral responses of a copepod, Temora longicornis, to different strains of toxic dinoflagellates, Alexandrium spp. Harmful Algae 62: 1-9, doi.org/10.1016/j.hal.2016.11.020
Zhang L, Takahashi D, Hartvig M, Andersen KH (2017): Food-web dynamics under climate change. Proc. Roy. Soc. B. 284(1867), doi.org/10.1098/rspb.2017.1772

2016

Albertsen CM, Nielsen A, Thygesen UH (2016) Choosing the observational likelihood in state-space stock assessment model. Canadian Journal of Fisheries and Aquatic Sciences DOI: dx.doi.org/10.1139/cjfas-2015-0532
Almeda R, Harvey TE, Connelly TL, Caca S, Buskey E (2016) Influence of UVB radiation on the lethal and sublethal toxicity of dispersed crude oil to planktonic copepod nauplii. Chemosphere 152: 446-458.
* Andersen KH, Berge T, Gonçalves RJ, Hartvig M, Heuschele J, Hylander S, Jacobsen NS, Lindemann C, Martens EA, Neuheimer AB, Olsson K, Palacz A, Prowe F, Sainmont J, Traving SJ, Visser AW, Wadhwa N, Kiørboe T (2016) Characteristic Sizes of Life in the Oceans, from Bacteria to Whales. Annu. Rev. Mar. Sci. 2016. 8: 217–241. doi: 10.1146/annurev-marine-122414-034144
* Andersen KH, Blanchard JL, Fulton EA, Gislason H, Jacobsen NS, van Kooten T (2016) Assumptions behind size-based ecosystem models are realistic. ICES Journal of Marine Science: Journal du Conseil, 73(6):1651-1655. doi: 10.1093/icesjms/fsv211.
* Andersen KH, Jacobsen NS, Farnsworth KD (2016) The theoretical foundations for size spectrum models of fish communities. Canadian Journal of Fisheries and Aquatic Science 73(4): 575-588 doi:10.1139/cjfas-2015-0230.
* Andersen KH, Jacobsen NS, Jansen T, Beyer JE (2016) When in life does density dependence occur in fish populations? Accepted for publication in Fish and Fisheries.
* Berge T, Chakraborty S, Hansen PJ, Andersen KH (2016) Modelling succession of key resource harvesting traits of mixotrophic plankton populations. The ISME Journal doi: 10.1038/ismej.2016.92.
* Berge T, Hansen PJ (2016) Role of the tertiary plastid of the predatory dinoflagellate Karlodinium armiger. Marine Ecology Progress Series 549: 41–54
Bondoc KG, Heuschele J, Gillard J, Vyverman W, Pohnert G. (2016) Selective silicate-directed motility in diatoms. Nature communications 7: 10540.
* Brun P, Kiørboe T, Licandro P, Payne MR (2016) The Predictive Skill of Species Distribution Models for Plankton in a Changing Climate. Global Change Biology, 22: 3170–
3181, doi: 10.1111/gcb.13274
* Brun P, Payne M, Kiørboe T (2016) Trait biogeography of marine copepods – an analysis across scales. Ecol Lett, doi: 10.1111/ele.12688
* Burgess MG, Diekert FK, Jacobsen NS, Andersen KH, Gaines SD (2016) Remaining questions in the case for balanced harvesting. Fish and Fisheries 17 (4): 1216-1226. doi: 10.1111/faf.12123
* Hansen AN, Visser AW (2016) Carbon export by vertically migrating zooplankton: an adaptive behavior model. Limnology and Oceanography. doi: 10.1002/lno.10249
* Hansen PJ, Ojamäe K, Berge T, Trampe E, Nielsen LT, Lips I, Kühl M (2016) Photoregulation in the kleptochloroplastidic dinoflagellate Dinophysis acuta. Frontiers in Microbiology 7: 785.
* Heilmann IT, Starke J, Andersen KH, Thygesen UH, Sørensen MP (2016) Dynamics of a physiologically structured population in a time-varying environment. Ecological Complexity 28:54-61, DOI: dx.doi.org/10.1016/j.ecocom.2016.10.004
Heuschele J, Nemming L, Tolstrup L, Kiørboe T, Nylund GM, Selander E (2016) The sex specific metabolomics footprint of Oithona davisae, J Sea Res 117: 1-6. dx.doi.org/10.1016/j.seares.2016.09.004
*Hirst AG, Lilley MKS, Glazier DS, Atkinson D (2016) Ontogenetic body-mass scaling of nitrogen excretion relates to body surface area in diverse pelagic invertebrates. Limnology & Oceanography doi: 10.1002/lno.10396
* Horne CR, Hirst AG, Atkinson D, Neves A, Kiørboe T (2016) A global synthesis of seasonal temperature-size responses in copepods. Global Ecol Biogeography, 25, 988–999. DOI: 10.1111/geb.12460 (Featured on the front cover)
* Jacobsen NS, Burgess M, Andersen KH (2016) Efficiency of fisheries is increasing at the ecosystem level. Fish and Fisheries doi:10.1111/faf.12171.
Jansen T, Kristensen K, Kainge PI, Durholtz D, Strømme T, Thygesen UH, Wilhelm MR, Kathena J, Fairweather TP, Paulus S, Degel H, Lipinski MR, Beyer J (2016) Migration, distribution and population (stock) structure of shallow-water hake (Merluccius capensis) in the Benguela Current Large Marine Ecosystem inferred using a geostatistical population model. Fisheries Research, vol: 179:156-167, DOI: dx.doi.org/10.1016/j.fishres.2016.02.026
Kathena J, Nielsen A, Thygesen UH, Berg C (2016) Hake Species (Merluccius capensis and M. paradoxus) Assessment in The Benguela Current Large Marine Ecosystem. Envir. Devel. 17: 193-201
* Kiørboe T (2016) Fluid dynamic constraints on resource acquisition in small pelagic organisms. Europ Phys J ST, 225: 671–685. DOI: 10.1140/epjst/e2015-50261-1
* Kiørboe T (2016) Foraging mode and prey size spectra in suspension feeding copepods and other zooplankton. Mar Ecol Prog Ser 558: 15-20.
* Kiørboe T, Gonçalves RJ, Couespel D, van Someren Gréve H, Saiz E, Tiselius P (2016) Prey perception in feeding-current feeding copepods. Limnol Oceanogr, 61: 1169–1171. doi: 10.1002/lno.10293
Kokkalis A, Eikeset AM, Thygesen UH, Steingrund P, Andersen KH (2016) Estimating uncertainty of data limited stock assessment. ICES Journal of Marine Science, DOI: dx.doi.org/10.1093/icesjms/fsw145
Le Quéré C, Buitenhuis ET, Moriarty R, Alvain S, Aumont O , Bopp L, Chollet S, Enright C, Franklin DJ, Geider RJ, Harrison SP, Hirst AG, Larsen S, Legendre L, Platt T, Prentice IC, Rivkin RB, Sathyendranath S, Stephens N, Vogt M, Sailley S, Vallina SM (2016) Role of zooplankton dynamics for Southern Ocean phytoplankton biomass and global biogeochemical cycles. Biogeosciences 13: 4111-4133. doi:10.5194/bg-13-4111-2016
* Lindegren M, Checkley DM Jr., Ohman MD, Koslow A, Goericke R (2016) Resilience and Stability of a Pelagic Marine Ecosystem. Proceedings of the Royal Society B-Biological Sciences, 283: 20151931.
* Lindemann C, Fiksen Ø, Andersen KH, Aksnes DL (2016) Scaling laws in phytoplankton nutrient uptake affinity. Frontiers in Marine Science doi: 10.3389/fmars.2016.00026.
Mariani P, Krivan V, MacKenzie B, Mullon C (2016) The migration game in habitat network: the case of tuna. Theoretical Ecology, vol 9, no. 2, pp. 219-232., 10.1007/s12080-015-0290-8
* Menden-Deuer S, Kiørboe T (2016) Small bugs with a big impact: linking plankton ecology with ecosystem processes. J Plankton Res 38: 1036–1043. doi:10.1093/plankt/fbw049
Mitra A, Flynn KJ, Tillmann U, Raven JA, Caron D, Stoecker DK, Not F, Hansen PJ, Hallegraeff G, Sanders RW, Wilken S, McManus G, Johnson M, Pitta P, Vagen S, Berge T, Calbet A, Thingstad F, Jeong HJ, Burkholder J-A, Glibert PM, Granéli E, Lundgren V (2016) Defining planktonic protist functional groups on mechanisms for energy and nutrient acquisition; incorporation of diverse mixotrophic strategies. Protist 167: 106-120
* Neuheimer AB, Hartvig M, Heuschele J, Hylander S, Kiørboe T, Olsson K, Sainmont J, Andersen KH (2016) Adult and offspring size in the ocean: A database of size metrics and conversion factors (Data Paper) Ecology, 97(4): 1083
Nielsen LT, Hansen PJ, Krock B, Vismann B (2016) Accumulation, transformation and breakdown of DSP toxins from the toxic dinoflagellate Dinophysis acuta in blue mussels, Mytilus edulis. Toxicon 117: 84-93
* Olsson KH, Gislason H, Andersen KH (2016) Differences in density-dependence drive dual offspring size strategies in fish. Journal of Theoretical Biology 407: 118–127.
* Olsson KH, Gislason H (2016) Testing reproductive allometry in fish. ICES Journal of Marine Science: Journal du Conseil, 73(6):1466-1473. doi: 10.1093/icesjms/fsw017
Payne MR, Barange M, Cheung WWL, MacKenzie BR, Batchelder HP, Cormon X, Eddy TD, et al. (2016) Uncertainties in projecting climate-change impacts in marine ecosystems. ICES Journal of Marine Science: Journal du Conseil, 73: 1272–1282.
*Pécuchet L, Törnroos A, Lindegren M (2016) Patterns and drivers of fish community assembly in a large marine ecosystem. Marine Ecology Progress Series 546: 239-248
Ravn-Jonsen L, Andersen KH, Vestergaard N (2016) An Indicator for Ecosystem Externalities in Fishing. Natural Resource Modeling 29(3) 400-425.
Rijnsdorp AD, Bastardie F, Bolam SG, Buhl-Mortensen L, Eigaard OR, Hamons KG, Hiddink JG, Hintzen NT, Ivanovic A, Kenny A, Laffargue P, Nielsen JR, O’Neill G, Piet GJ, Polet H, Sala A, Smith C, van Denderen PD, van Kooten T, Zengin M. (2016) Towards a framework for the quantitative assessment of trawling impact on the seabed and benthic ecosystem. ICES Journal of Marine Science 73: i127-138.
* Schnedler-Meyer NA, Mariani P, Kiørboe T (2016) The global susceptibility of coastal forage fish to competition by large jellyfish. Proc R Soc B 283: 20161931
Selander E, Heuschele J, Nylund GM, Pohnert G, Pavia H, Bjærke O, Pender-Healy L, Tiselius P, Kiørboe T (2016) Solid phase extraction and metabolic profiling of exudates from living copepods. PeerJ. 4: e1529. doi.org/10.7717/peerj.1529
Stoecker DK, Hansen PJ, Caron D, Mitra A (2016/2017) Mixotrophy in the Marine Plankton. Annual Review of Marine Science 9:2.1-2.25 (e-pub/publ)
* Thonig A, Knott KE, Kesäniemi JE, Hansen BW, Banta GT (2016) Population and reproductive dynamics of the polychaete Pygospio elegans in a boreal estuary complex. Invertebrate Biology 135(4): 370-384
Thygesen UH (2016) A diffusion approximation based on renewal processes with applications to strongly biased run–tumble motion. Bulletin of Mathematical Biology 78(3):556-579, DOI: dx.doi.org/10.1007/s11538-016-0155-3
Thygesen UH, Sommer L, Evans K, Patterson TA (2016) Dynamic optimal foraging theory explains vertical migrations of bigeye tuna. Ecology 97(7):1852-1861, DOI: dx.doi.org/10.1890/15-1130.1
* Traving SJ, Bentzon-Tilia M, Knudsen-Leerbeck H, Mantikci M, Hansen JLS, Stedmon CA, Sørensen H, Markager S and Riemann L (2016) Coupling bacterioplankton populations and environment to community function in coastal temperate waters. Frontiers in Microbiology, 7 (1533): 1-13
* Tsoukali S, Olsson KH, Visser AW, MacKenzie BR (2016) Adult lifetime reproductive value in fish depends on size and fecundity type. Can. J. Fish. Aqua. Sci. 73(9): 1405-1412, 10.1139/cjfas-2015-0378
* Tsoukali S, Visser AW, MacKenzie BR (2016) Functional responses of North Atlantic fish eggs to increasing temperature. Marine Ecology Progress Series 555: 151-165; doi: 10.3354/meps11758
van Denderen PD, Rijnsdorp AD, van Kooten T. (2016) Using marine reserves to manage impact of bottom trawl fisheries requires consideration of benthic food-web interactions. Ecological Applications 26 (7): 2302-2310
van Deurs M, Persson A, Lindegren M, Jacobsen C, Jorgensen C, Neuenfeldt S, Nilsson A (2016) Marine ecosystem connectivity mediated by migrant-resident interactions and the concomitant cross-system flux of lipids. Ecology and Evolution doi:10.1002/ece3.2167
* Weisse T, Anderson R, Arndt H, Calbet A, Hansen PJ, Montagnes DJS (2016) Functional ecology of aquatic phagotrophic protists – concepts, limitations, and perspectives. J. Eur. Protistol. 55: 50–74

2015

Almeda R, Connelly TL, Buskey E (2015) How much crude oil can zooplankton ingest? Estimating the quantity of dispersed crude oil defecated by planktonic copepods. Environmental Pollution. doi:10.1016/j.envpol.2015.10.041.
*Andersen A, Wadhwa N, Kiørboe T (2015) Quiet swimming at low Reynolds number. Phys. Rev. E, 91: 042712. DOI:10.1103/PhysRevE.91.042712
(Featured by APS Physics Central: www.physicscentral.com/buzz/blog/index.cfm?postid=7102857878385272483)
*Andersen KH, Aksnes DL, Berge T, Fiksen Ø, Visser AW. (2015) Modeling emergent trophic strategies in plankton. J. Plankton Research 37(5) 862-868. doi:10.1093/plankt/fbv054
*Andersen KH, Beyer JE (2015): Size structure, not metabolic scaling rules, determines fisheries reference points Fish and Fisheries 16(1) 1-22.
*Andersen KH, Brander K, Ravn-Jonsen LJ (2015). Trade-offs between objectives for ecosystem management of fisheries Ecological Applications 25: 1390-1396.
*Andersen KH, Jacobsen NS, Farnsworth KD (2015) The theoretical foundations for size spectrum models of fish communities. Canadian Journal Fisheries Aquatic Sciences. doi:10.1139/cjfas-2015-0230
*Brun P, Kiørboe T, Payne M (2015) Measuring evolutionary adaptations of phytoplankton with local field observations. PNAS www.pnas.org/cgi/doi/10.1073/pnas.1513353112
*Brun P, Vogt M, Payne M, Gruber N, O’Brien C, Buitenhuis ET, Le Quéré C, Leblanc K, Luo YW (2015). Ecological niches of open ocean phytoplankton taxa. Limnol Oceanogr 60: 1020-1038
Burgess MG, Diekert FK, Jacobsen NS, Andersen KH, Gaines SD (2015). Remaining questions in the case for balanced harvesting. Fish. doi: 10.1111/faf.12123.
Chakraborty S (2015) The influence of generalist predators in spatially extended predator-prey systems. Ecological Complexity 23: 50-60.
Chakraborty S, Kooi B, Biswas B, Chattopadhyay J (2015) Revealing the role of predator interference in a predator-prey system with disease in prey population. Ecological Complexity 21: 100-111.
Dickey-Collas, M., Hintzen, N. T., Nash, R. D. M., Schon, P.-J., and Payne, M. R. 2015. Quirky patterns in time-series of estimates of recruitment could be artefacts. ICES Journal of Marine Science, 72: 111–116
*Ergin FG, Watz BB, Wadhwa N (2015) Pixel-accurate dynamic masking and flow measurements around small breaststroke-swimmers using long-distance MicroPIV. Proceedings of the 11th International Symposium on Particle Image Velocimetry - PIV15, Santa Barbara, CA.
Ferreira ASA, Hátún H, Counillon F, Payne MR, Visser AW (2015). Synoptic scale analysis of mechanisms driving surface chlorophyll dynamics in the North Atlantic. Biogeosciences, 12(1), 3641-3653
Frisk C, Andersen KH, Temming A, Herrmann JP, Madsen KS, Kraus G (2015): Environmental effects on sprat (Sprattus sprattus) physiology and growth at the distribution frontier: A bioenergetic modelling approach. Ecological Modelling 299130–139.
*Glazier DS, Hirst AG, Atkinson D (2015) Shape shifting predicts ontogenetic changes in metabolic scaling in diverse aquatic invertebrates. Proceedings of the Royal Society B 282: 20142302. doi:10.1098/rspb.2014.2302
*Gonçalves RJ, Kiørboe T (2015) Perceiving the algae: how feeding-current feeding copepods detect their non-motile prey. Limnol Oceanogr 60: 1286–1297
*Horne C, Hirst AG, Atkinson D (2015) Temperature-size responses match latitudinal-size clines in arthropods, revealing critical differences between aquatic and terrestrial species. Ecology Letters 18: 327-335. doi: 10.1111/ele.12413
*Horne C, Hirst A, Atkinson D, Neves A, Kiørboe T (submitted) A global synthesis of.
Huse G, MacKenzie BR, Trenkel V, Doray M, Nøttestad L, Oskarsson G (2015) Spatially explicit estimates of stocks sizes, structure and biomass of herring and blue whiting, and catch data of bluefin tuna. Earth System Science Data Discussions 7: 35-46. doi:10.5194/essd-7-35-2015 (OA)
Hylander S, Kiørboe T, Snoeijs P, Sommaruga R, Nielsen TG (2015) Concentrations of sunscreens and antioxidant pigments in Arctic Calanus spp. in relation to ice cover, ultraviolet radiation, and the phytoplankton spring bloom. Limnol Oceanogr 60: 2197-2206
*Jacobsen NS, Essington TE, Andersen KH (2015). Comparing model predictions for ecosystem based management. Can. J. Fish. Aquat. Sci. NRC Research Press. doi: 10.1139/cjfas-2014-0561.
Jaspers C, Møller LF, Kiørboe T (2015) Egg production rates under variable food conditions and starvation in the comb jelly Mnemiopsis leidyi - insights to its invasion success in northern Europe. J Plankton Res 37: 1011-1018. doi:10.1093/plankt/fbv017
Jónasdóttir SH, Visser AW, Richardson K, Heath MR. (2015) Seasonal copepod lipid pump promotes carbon sequestration in the deep North Atlantic. Proceedings of the National Academy Sciences. 112 no. 39: 12122–12126. doi:10.1073/pnas.1512110112
*Kiørboe T (submitted) Fluid dynamic constraints on resource acquisition in small pelagic organisms. Submitted.
*Kiørboe T, Ceballos S, Thygesen UH (2015) Interrelations between senescence, life history traits, and behaviour in planktonic copepods. Ecology 96: 2225-2235
Kokkalis A, Thygesen UH, Nielsen A, Andersen KH (2015) Limits to the reliability of size-based fishing status estimation for data-poor stocks. Fisheries Research 171: 4-11
Kolding J, Jacobsen NS, Andersen KH, van Zwieten P (2015) Maximizing fisheries yields while maintaining community structure. Canadian Journal of Fisheries Aquatic Sciences.
Logue JB, Stedmon CA, Kellerman AM, Nielsen NJ, Andersson AF, Laudon H, Kritzberg ES (2015) Experimental insights into the importance of aquatic bacterial community composition to the degradation of dissolved organic matter. ISME J 1-13
*Martens EA, Wadhwa N, Nis S. Jacobsen NS, Christian Lindemann C, Andersen KH, Visser AW. (2015) Size structures sensory hierarchy in ocean life. Proceedings of the Royal Society B. 282: 20151346. dx.doi.org/10.1098/rspb.2015.1346
Maud J, Atkinson A, Hirst AG, Lindeque PK, Widdicombe CE, Harmer RA, McEvoy AJ, Cummings DC (2015) How does Calanus helgolandicus maintain its population in a variable environment? Analysis of a 25-year time series from the English Channel. Progress in Oceanography 137: 513-523
*Neuheimer AB, Hartvig M, Heuschele J, Hylander S, Kiørboe T, Olsson K, Sainmont J, Andersen KH (2015) Adult and offspring size in the ocean: A database of size metrics and conversion factor (Data Paper) Ecology in press
*Neuheimer AB, Hartvig M, Heuschele J, Hylander S, Kiørboe T, Olsson K, Sainmont J, Andersen KH (2015) Adult and offspring size in the ocean over 17 orders of magnitude follows two life history strategies. Ecology 96: 3303-3311
*Nielsen LT, Kiørboe T (2015) Feeding currents facilitate a mixotrophic way of life. ISME Journal, 9, 2117–2127, doi:10.1038/ismej.2015.27.
*Pécuchet L, Törnroos A, Lindegren M (2015) Environmental filtering drives functional diversity of fish communities in a large brackish marine ecosystem. Marine Ecology-Progress Series (accepted)
Riisgaard K, Nielsen TG, Hansen PJ (2015) Impact of elevated pH on Arctic spring bloom succession. Marine Ecology Progress Series530:63-75
Rullyanto A, Jónasdóttir SH, Visser, AW, (2015). Advective loss of overwintering Calanus finmarchicus from the Faroe-Shetland channel. Deep Sea Research Part I: Oceanographic Research Papers. 98, 76–82
*Sainmont J, Andersen KH, Thygesen UH, Fiksen Ø, Visser AW. (2015) An effective algorithm for approximating adaptive behavior in seasonal environments. Ecological Modelling. 311: 20-30
*Sichlau MH, Thygesen UH, Nielsen EE, Kiørboe T (2015) Mating success and sexual selection in a pelagic copepod, Temora longicornis: Evidence from paternity analyses. Limnol. Oceanogr. 60: 600–610. doi: 10.1002/lno.10052
Thoisen C, Riisgaard K, Lundholm N, Nielsen TG, Hansen PJ (2015) Effect of acidification on an Arctic phytoplankton community from Disko Bay, West Greenland. Marine Ecology Progress Series 520: 21-34
*Traving SJ, Thygesen, UH, Riemann L, Stedmon CA (2015) A model of extracellular enzymes in free-living microbes: which strategy pays off? AEM 81:7385-7393
(Featured in the AEM Editorial Spotlight: http://aem.asm.org/content/81/21/7349.full
*Törnroos A, Nordström MC, Aarnio K, Bonsdorff E. (2015) Environmental context drives trophic trait plasticity in a key species, the tellinid clam Macoma balthica L. Journal of Experimental Marine Biology and Ecology 472: 32-40
Visser AW, Nielsen TG, Middelboe M, Høyer JI, Markager S. (2015). Oceanography and the base of the pelagic food web in the southern Indian Ocean. Journal of Plankton Research. doi:10.1093/plankt/fbv019
*Zhang L, Andersen KH, Dieckmann U, Brännström Å (2015): Four types of interference competition and their impacts on the ecology and evolution of size-structured populations and communities. J. Theoretical Biology 380: 280-290.

2014

Augustine,S., Jaspers C, Kooijman SALM, Carlotti F, Poggiale J-C, Freitas V, van der Veer HW, van Walraven L (2014). Mechanisms behind the metabolic flexibility of an invasive comb jelly. J. Sea Res. DOI:10.1016/j.seares.2014.09.005
Berge T, Hansen PJ (accepted, 2014). Role of the tertiary plastid of the predatory dinoflagellate Karlodinium armiger. Mar Ecol Prog Ser In press
Bianco G, Mariani P, Visser AW, Mazzocchi MG, Pigolotti S (2014). Analysis of self-overlap reveals trade-offs in plankton swimming trajectories. Journal of the Royal Society Interface. 11(96), 20140164
Blanchard JL, Andersen KH, Scott F, Hinzen NT, Piet G, Jennings S (2014). Evaluating targets and trade-offs among fisheries and conservation objectives using a multispecies size spectrum model. J. Applied Ecology, 51: 612-622
Bureau E, Schilder F, Elmegård M, Santos I, Thomsen J, Starke J (2014). Experimental Bifurcation Analysis of an Impact Oscillator – Determining Stability. Journal of Sound and Vibration 333(21): 5464-5474
Calduch-Verdiell N, MacKenzie BR, Vaupel JW, Andersen KH (2014). A life-history evaluation of the impact of maternal effects on recruitment and fisheries reference points. Canadian Journal of Fisheries and Aquatic Science 71: 1113–1120
Casale P, Mariani P (2014). The first “lost year” of Mediterranean sea turtles: dispersal patterns indicate subregional management units for conservation. Marine Ecology Progress Series. 498:263-274. doi: 10.3354/meps10640
Ceballos S, Sichlau MH, Heuschele J, Kiørboe T (2014). Low fertilization rates in a pelagic copepod caused by sexual selection? J. Plankton Res 36: 736-742. doi:10.1093/plankt/fbu021
De Luca G, Mariani P, MacKenzie BR, Marsili M (2014). Fishing out collective memory of migratory schools. J. Roy. Soc. Interface 11: 20140043. dx.doi.org/10.1098/rsif.2014.0043
Engelhard GH, Peck MA, Rindorf A, Smout S, van Deurs M, Raab K, Andersen KH, Garthe S, Lauerburg RAM, Scott F, Brunel T, Aarts G, van Kooten T, Dickey-Collas M (2014). Forage fish, their fisheries, and their predators: who drives whom? ICES J Mar Sci 71: 90-104
FitzGeorge-Balfour T, Hirst AG, Lucas CH, Craggs J (2014). Influence of copepod size and behaviour on vulnerability to predation by the scyphomedusa Aurelia aurita. J Plankton Res 36: 77-90
Flynn KJ, Hansen PJ (2013). Cutting the canopy to defeat the “selfish gene”; conflicting selection pressures for the integration of phototrophy in mixotrophic protists. Protist 164: 811-823
Flynn, KJ, Stoecker DK, Mitra A, Raven JA, Glibert PM, Hansen PJ, Granéli E, Burkholder JM (2013). HORIZONS - Misuse of the phytoplankton-zooplankton dichotomy: The need to assign organisms as mixotrophs within plankton functional types. J Plankton Res 35: 3-11 Horizons
Gonçalves RJ, van Someren Gréve H, Couespel D, Kiørboe T (2014). Mechanisms of prey size selection in a suspension feeding copepod, Temora longicornis. Mar Ecol Prog Ser. 517: 61-74
Hansen PJ, Nielsen LT, Johnson MD, Berge T, Flynn KJ (2013). Acquired phototrophy in Mesodinium and Dinophysis – a review of cellular organization, prey selectivity, nutrient uptake and bioenergetics. Harmful Algae 28: 126-139
Hays GC, Christensen A, Fossette S, Schofield G, Talbot J, Mariani P (2014). Route optimization and solving Zermelo's navigation problem during long distance migration in cross flows. Ecology Letters. 17 Issue: 2 Pages: 137-143 doi: 10.1111/ele.12219
Heuschele J, Ceballos S, Andersen Borg CM, Bjærke O, Isari S, Lasley-Rasher R, Souissi A, Souissi S, Titelman J (2014). Non-consumptive effects of predator presence on copepod reproduction: insights from a mesocosm experiment. Mar Biol 161: 1653-1666doi:10.1007/s00227-014-2449-z
Heuschele J, Selander E (2014). The chemical ecology of copepods. J Plankton Res 36, Issue 4: 895-913 doi:10.1093/plankt/fbu025
Hirst A, Kiørboe T (2014). Macroevolutionary Patterns of Sexual Size Dimorphism in Copepods. Proc. R. Soc. B 281: 20140739.doi.org/10.1098/rspb.2014.0739
Hirst AG, Glazier DS, Atkinson D (2014). Body shape-shifting during growth permits tests that distinguish between competing geometric theories of metabolic scaling. Ecology Letters 17: 1274-1281. doi: 10.1111/ele.12334
[Featured on front cover]
Hirst AG, Keister JE, Richardson AJ, Ward P, Shreeve RS, Escribano RV (2014). Re-assessing copepod growth using the Moult Rate Method. J Plankotn Res 36: 1224-1232. doi: 10.1093/plankt/fbu045
Hylander S, Grenwald J, Kiørboe T (2014). Fitness cost of UVR exposure in marine pelagic copepods. Funct. Ecol. 28: 149–158. doi: 10.1111/1365-2435.12159
Jacobsen NS, Gislason H, Andersen KH. (2014). The consequences of balanced harvesting of fish communities. Proc. R. Soc. B 281: 20132701
Kiørboe T, Hirst AG (2014). Shifts in mass-scaling of respiration, feeding, and growth rates across life-form transitions in marine pelagic organisms. Am. Nat. 183: E118–E130. DOI: 10.1086/675241
Kiørboe T, Jiang H, Gonçalves RJ, Nielsen LT, Wadhwa N (2014). Flow disturbances generated by feeding and swimming zooplankton. PNAS 111:11738–11743.
(Featured in J.Exp Biol , in J. Plankton Res, and in Scientific American)
Kristensen K, Thygesen UH, Andersen KH, Beyer JE (2014). Estimating spatio-temporal dynamics of size-structured populations. Canadian Journal of Fisheries and Aquatic Science 71: 326–336.
Lika K, Augustine S, Pecquerie L, Kooijman SA (2014). The bijection from data to parameter space with the standard DEB model quantifies the supply-demand spectrum. J Theor Biol. doi.org/10.1016/j.jtbi.2014.03.025
Lindegren M, Andersen KH, Casini M, Neuenfeldt S (2014). A metacommunity perspective on source-sink dynamics and management: the Baltic Sea as a case study. Ecological Applications 24:1820:1832
MacKenzie BR, Payne M, Boje J, Højer JL, Siegstad H (2014). A cascade of warming impacts brings bluefin tuna to Greenland waters. Global Change Biology 20: 2484–2491, doi: 10.1111/gcb.12597
(Featured on front cover of issue)
Martens EA, Wadhwa N, Jacobsen NS, Lindemann C, Andersen KH, Visser A (submitted). Size and sense in the Ocean. Journal of the Royal Society Interface
Marty L, Rochet MJ, Ernande B (2014). Temporal trends in age and size at maturation of four North Sea gadid species: cod, haddock, whiting and Norway pout. Marine Ecology Progress Series 497: 179-197
Mitra A, Flynn KJ, Burkholder JM, Berge T, Calbet A, Raven JA, Granéli E, Glibert PM, Hansen PJ, Stoecker DK, Thingstad F, Tillmann U, Våge S, Wilken S, Zubkov M (2014). The role of mixotrophic protists in the biological carbon pump. Biogeosciences 11: 995-1005
Murphy EJ, Watkins JL, Trathan PN, Reid K, Meredith MP, Hill SL, Thorpe SE, Johnston NM, Clarke A, Tarling GA, Collins MA, Forcada J, Atkinson A, Ward P, Staniland IJ, Pond DW, Cavanagh RA, Shreeve RS, Korb RE, Whitehouse MJ, Rodhouse PG, Enderlein P, Hirst AG, Martin AR, Briggs DR, Cunningham NJ, Fleming AH (2012). Spatial and temporal operation of the Scotia Sea ecosystem. In: Rogers AD, Johnston NM, Murphy EJ, Clarke A. (eds). Antarctic ecosystems: An extreme environment in a changing world. John Wiley & Sons, Ltd, 160-212
Neuheimer AB, MacKenzie BR. Explaining life history variation in a changing climate across a species’ range. Ecology. 95: 3364-337.5
Prowe AEF, Pahlow M, Dutkiewicz S, Oschlies A (2014). How important is diversity for capturing environmental-change responses in ecosystem models? Biogeosciences 11(12): 3397-3407, doi: 10.5194/bg-11-3397-2014
Reuman DC, Gislason H, Barnes C, Mèlin F, Jennings S (2014). The marine diversity spectrum. J. Anim. Ecol., 83(4): 963-979. http://dx.doi.org/10.1111/1365-2656.12194
Sainmont J, Andersen, KH, Varpe Ø, Visser AW (2014). Capital versus income breeding in a seasonal Environment. American Naturalist 184 (4): DOI: 10.1086/677926
Sainmont J, Webster C, Heuschele J, Gislason A, Sylvander P, Wang M, Varpe Ø (2014). Inter- and intra-specific diurnal habitat selection of zooplankton during the spring bloom observed by Video Plankton Recorder. Marine Biology 161 (8): 1931-1941
Sanders R, Henson S, Koski M, De La Rocha CL, Painter SC, Poulton A, Riley J, Salihoglu B, Visser AW, Yool A, Bellerby R, Martin A (2014). The Biological Carbon Pump in the North Atlantic. Prog Oceanogr. DOI: 10.1016/j.pocean.2014.05.005
Schilder F, Bureau E, Santos I, Thomsen J, Starke J (2014, submitted). Continuation in Experiments: An Atlas Algorithm for Noise-Contaminated Zero Problems
Scott F, Blanchard JL, Andersen KH (2014). mizer: an R package for multispecies, trait-based and community size spectrum ecological modelling. Methods in Ecology and Evolution. 5: 1121-1125
van der Molen J, van Beek J, Augustine S, Vansteenbrugge L, van Walraven L, Langenberg V, van der Veer HW, Hostens K, Pitois S, Robbens J (2014). Modelling survival and connectivity of Mnemiopsis leidyi in the southern North Sea and Scheldt estuaries. Ocean Sci. Discuss. 11: 1561-1611
Wadhwa N, Andersen A, Kiørboe T (2014). Hydrodynamics and energetics of jumping copepod nauplii and copepodids. J Exp Biol 217: 1-10. doi:10.1242/jeb.105676
Zhang L, Thygesen UH, Banerjee M (2014). Size-dependent diffusion promotes the emergence of spatiotemporal patterns. Physical Review E: 90, issue: 1

2013

Andersen KH, Beyer JE (2013). Size structure, not metabolic scaling rules, determines fisheries reference points. Fish and Fisheries
Barton A, Pershing A, Litchman E, Record N, Edwards K, Finkel Z, Kiørboe T, Ward B (2013). The Biogeography of Marine Plankton Traits. Ecol. Lett. 16: 522–534. doi: 10.1111/ele.12063
Brander K (2013). Climate and current anthropogenic impacts on fisheries. Climatic Change 119: 9-21
Brander K, Neuheimer A, Andersen KH, Hartvig M (2013). Food for Thought: Overconfidence in model projections. ICES Journal of Marine Science 70(6), 1065–1068
Bureau E, Schilder F, Santos I, Thomsen J, Starke J (2013). Experimental Bifurcation Analysis of an Impact Oscillator – Tuning a Non-Invasive Control Scheme. Journal of Sound and Vibration 332(22), 5883–5897
Dickey-Collas M, Engelhard GH, Rindorf A, Raab K, Smout S, Aarts G, van Deurs M, Brunel T, Hoff A, Lauerburg RAM, Garthe S, Andersen KH, Scott F, van Kooten T, Beare D, Peck MA (2013). Ecosystem-based management objectives for the North Sea: riding the forage fish rollercoaster. ICES Journal of Marine Science. doi:10.1093/icesjms/fst075
FitzGeorge-Balfour T, Hirst AG, Lucas CH, Craggs J (2013). Influence of copepod size and behaviour on vulnerability to predation by the scyphomedusa Aurelia aurita. Journal of Plankton Research. doi: 10.1093/plankt/fbt077
Flynn KJ, Hansen PJ (2013). Cutting the canopy to defeat the "selfish gene"; conflicting selection pressures for the integration of phototrophy in mixotrophic protists. Protist. 164: 811-823
Flynn, KJ, Stoecker DK, Mitra A, Raven JA, Glibert PM, Hansen PJ, Granéli E, and Burkholder JM (2013) Misuse of the phytoplankton-zooplankton dichotomy: the need to assign organisms as mixotrophs within plankton functional types. Journal of Plankton Research. J. Plankton Res. 35: 3-11 doi:10.1093/plankt/fbs062
Gaididei Y, Gorria C, Berkemer R, Christiansen P, Kawamoto A, Sørensen M, Starke J (2013). Stochastic control of traffic patterns. Invited article for special issue “Nonlinear Partial Differential Equations: Theory and Applications to Complex Systems”
(editors: Henri Berestycki, Danielle Hilhorst, Frank Merle, Masayasu Mimura and Khashayar Pakdaman) of NHM (Networks and Heterogeneous Media), 8(1), 261–273, dedicated to Professor Hiroshi Matano on the occasion of his 60th birthday
Hansen PJ, Nielsen LT, Johnson M, Berge T, Flynn KJ (2013). Acquired phototrophy in Mesodinium and Dinophysis – A review of cellular organization, prey selectivity, nutrient uptake and bioenergetics. Harmful Algae 28:126-139
Hartvig M, Andersen KH (2013). Coexistence of structured populations with size-based prey selection. Theoretical Population Ecology 89:24-33
Heuschele J, Eliassen S, Kiørboe T (2013). Optimal mate choice patterns in pelagic copepods. Oecologia 172:399-408. doi 10.1007/s00442-012-2516-4
Hirst AG, Bonnet D, Conway DVP, Kiørboe T (2013). Female-biased sex ratios in marine pelagic copepods: Comment on Gusmão et al. (2013). Mar. Ecol. Prog. Ser. doi: 10.3354/meps10522
Hirst AG, Forster J (2013). When growth models are not universal: evidence from marine invertebrates. Proceedings of the Royal Society B 280:20131546. http://dx.doi.org/10.1098/rspb.2013.1546
Hollowed AB, Barange M, Beamish RJ, Brander K, et al (2013). Projected impacts of climate change on marine fish and fisheries. ICES Journal of Marine Science (ISSN: 10543139). dx.doi.org/10.1093/icesjms/fst081, 70: 1023-1037
Houle JE, Andersen KH, Farnsworth KD, Reid DG (2013). Emerging asymmetric interactions between forage and predator fisheries impose management trade-offs. Journal of Fish Biology 83(4) 890-904
Hylander S, Grenvald JC, Kiørboe T (2013). Fitness costs and benefits of ultraviolet radiation exposure in marine pelagic copepods. Functional Ecology. doi: 10.1111/1365-2435.12159
Jansen T, Gislason H (2013). Population Structure of Atlantic Mackerel (Scomber scombrus) PloS one 8 (5), e64744
Jaspers C, Haraldsson M, Lombard F, Bolte S, Kiørboe T (2013). Seasonal dynamics of early life stages of invasive and native ctenophores give clues to invasion and bloom potential in the Baltic Sea. J. Plankton Res. 35: 582–594
Jonsen ID, Basson M, Bestley S, Bravington MV, Patterson TA, Pedersen MW, Thomson R, Thygesen UH, and Wotherspoon SJ (2013). State-space models for bio-loggers: A methodological road map. Deep-Sea Research. Part 2: Topical Studies in Oceanography 88-89: 34-46. doi: http://dx.doi.org/10.1016/j.dsr2.2012.07.008
Kiørboe T (2013). Attack or attacked: The sensory and fluid mechanical constraints of copepod predator-prey interactions. Int Comp Biol, pp. 1–11. doi:10.1093/icb/ict021
Kiørboe T (2013). Zooplankton body composition. Limnol. Oceanogr. 58:1843-1850. doi:10.4319/lo.2013.58.5.1843
Kiørboe T, Jiang H (2013). To eat and not be eaten: Optimal foraging behavior in suspension feeding copepods. J. Roy. Soc. Int. 10: 20120693. doi.org/10.1098/rsif.2012.0693
Litchman E, Ohman M, Kiørboe T (2013). Trait-based approaches to zooplankton communities. J Plankton Res 35: 473–484
(Featured on the front cover)
Lombard F, Guidi L, Kiørboe T (2013). Effect of type and concentration of ballasting particles on sinking rate of marine snow produced by the appendicularian Oikopleura dioica. PlosOne 8(9): e75676. doi:10.1371/journal.pone.0075676
Lombard F, Koski M, Kiørboe T (2013). Copepods use chemical trails to find sinking marine snow aggregates. Limnol. Oceanogr. 58: 185-192
MacKenzie B, Payne MR (2013). Fisheries: Manage declines. Nature, 495: 314
Mariani P, Andersen KH, Visser AW, Barton AD, Kiørboe T (2013). Control of plankton seasonal succession by adaptive grazing. Limnol Oceanogr 58(1) 173-184
Martens EA, Thutupalli S, Fourrière A, Hallatschek O (2013). Chimera states in mechanical oscillator networks. PNAS 2013 110: 10563-10567
Mitra K, Flynn J, Burkholder JM, Berge T, Calbet A, Raven JA, Granéli E, Glibert PM,Hansen PJ, Stoecker DK, Thingstad F, Tillmann U, Våge S, Wilken S, Zubkov MV (2013). The role of mixotrophic protists in the biological carbon pump. Biogeosciences Discussions 10: 13535-13562
Neuheimer AB, MacKenzie BR (2013). Explaining variation in life history timing across a species’ range: Spawning time in an exploited marine fish. ICES Annual Science Conference, Sept. 23-27, 2013
Payne MR (2013). Climate change at the dinner table. Nature, 497: 320–321
(Featured as the 2013 Editors choice in Nature 504: 386)
Peck MA, Neuenfeldt S, Essington T, Trenkel VM, Takasuka A, Gislason H, Dickey-Collas M, Andersen KH, Ravn-Jonsen L, Vestergaard N, Kvamsdal S, Gårdmark A, Link J, Rice JC (2013). Forage fish interactions: A symposium on creating the tools for ecosystem-based management of marine resources. ICES Journal of Marine Science, 71:1-4. doi:10.1093/icesjms/fst174
Poloczanska ES,…, Brander K, et al (2013). Global imprint of climate change on marine life. Nature Clim.Change 3 (10): 919-25
Prowe AEF, Pahlow M, Dutkiewicz S, Oschlies A (2013). Small diversity effects on ocean primary production under environmental change in a diversity-resolving ocean ecosystem model. Biogeosciences Discuss. 10:12571-12591. doi:10.5194/bgd-10-12571-2013
Rice J, Daan N, Gislason H, Pope JG (2013). Does functional redundancy stabilize fish communities? ICES Journal of Marine Science: Journal du Conseil 70 (4), 734-742
Ross SD, Behrens JW, Brander K, Methling C, Mork J (2013). Haemoglobin genotypes in cod (Gadus morhua L): their geographic distribution and physiological significance. Comparative Biochemistry and Physiology. Part A: Molecular & Integrative Physiology. 166:158-168
Sainmont J, Thygesen UH, Visser AW (2013). Diel vertical migration arising in a habitat selection game. Theoretical Ecology, 6(2):241–251. doi: 10.1007/s12080-012-0174-0
Salinger MJ, Bell JD, Evans K, Hobday AJ, Allain V, Brander K, Dexter P, Harrison DE, Hollowed AB, Lee B, Stefanski R (2013). Climate and oceanic fisheries: recent observations and projections and future needs. Climatic Change. 119: 213-221
Sparrevohn C, Lindegren M, MacKenzie BR (2013). Climatic induced response of commercially important flatfish species near Denmark during the 20th century. Fisheries Oceanography 22: 400-408
Starke J (2013). Dynamical System Approaches to Combinatorial Optimization. Invited Chapter. Pages 1065-1124 in Pardalos P, Du D-Z, Graham R: Handbook of Combinatorial Optimization, 2nd Edition. Springer Verlag, Heidelberg, New York
Tiselius P, Saiz E, Kiørboe T (2013). Sensory capabilities and food capture of two small copepods, Paracalanus parvus and Pseudocalanus sp. Limnol Oceanogr. 58: 1657-1666. doi:10.4319/lo.2013.58.5.1657
Visser AW, Fiksen Ø (2013). Optimal foraging in marine ecosystem models: selectivity, profitability and switching. Mar Ecol Prog Ser 473: 91-101
Zhang L, Hartvig M, Knudsen M, Andersen KH (2013). Size-based predictions of food web patterns. Theoretical Ecology

2012

Andersen MB, Bruno E, and Kiørboe T (2012) The Kinematics of Swimming and Relocation Jumps in Copepod Nauplii. PLosOne 7(10): e47486. doi:10.1371/journal.pone.0047486
Bell J, Evans K, Hobday A, Allain V, Brander K, Dexter P, Harrison E, Hollowed A, Lee B, and Stefanski R (2012) Climate and oceanic fisheries: Recent observations and projections, and future needs. Climatic Change (ISSN: 0165-0009)
Berge T, Poulsen LK, Moldrup M, Daugbjerg N, and Hansen PJ (2012) Marine microalgae attack and feed on metazoans. ISME Journal. 6: 1926-1936
(Selected as Editors Choice in Science and Featured article in ISME Journal)
Berge T, Daugbjerg N, and Hansen PJ (2012) Isolation and cultivation of microalgae select for low production rate and tolerance to high pH. Harmful algae 20: 101-110
Bergkvist J, Thor P, Jakobsen HH, Wängberg SA, and Selander E (2012) Grazer-induced chain length plasticity reduces grazing risk in a marine diatom. Limnology and Oceanography 57: 318-324
Brander K (2012) Climate and current anthropogenic impacts on fisheries. Climatic Change. doi:10.1007/s10584-012-0541-2
Brander K, and Havenhand J (2012) Impacts of climate change, including acidification, on marine ecosystems and fisheries. In: Climate impacts on the Baltic Sea: From science to policy (ISBN: 978-3-642-25727-8), pages: 129-160, 2012, Springer, Berlin
Bruno E, Andersen MB, and Kiørboe T (2012). Prey detection and capture in copepod nauplii. PLosOne. 7: e47906. doi:10.1371/journal.pone.0047906
Burrows MT, Brander KS et al. (2012) Invasive species unchecked by climate - response. Science 335: 538-539
Charnov EL, Gislason H, and Pope JG (2012) Evolutionary assembly rules for fish life histories. Fish and Fisheries. doi: 10.1111/j.1467-2979.2012.00467.x
Corradi O, Hjorth P, and Starke J (2012) Equation-free detection and continuation of a Hopf bifurcation point in a particle model of pedestrian flow, SIAM Journal on Applied Dynamical Systems 11(3), 1007-1032.
Forster J, and Hirst AG (2012) The temperature-size rule emerges from ontogenetic differences between growth and development rates. Functional Ecology 26: 483-492
Forster J, Hirst AG, and Atkinson D (2012) Warming-induced reductions in body size are greater in aquatic than terrestrial species. Proc. Natl. Acad. Sci USA 109: 19310-19314
(Featured on the front cover and as the lead article)
Forster J, Hirst AG, and Esteban G (2012) Exploring the mechanism of the temperature-size rule in unicellular organisms. The ISME Journal: multidisciplinary journal of microbial ecology. doi: 10.1038/ismej.2012.76
Hansen MO, Nielsen TG, Stedmon C, and Munk P (2012 ) Oceanographic regime shift during 1997 in Disko Bay, Western Greenland. Limnol. Oceanogr., 57(2), 2012, 634–644
Hansen PJ, Moldrup M, Tarangkoon W, Garcia-Cuetos L, and Moestrup Ø (2012) Direct evidence for symbiont sequestration in the marine red tide ciliate Mesodinium rubrum. Aquatic Microbial Ecology 66: 63-75
Henriksen MV, Madsen SJ, Nielsen TG, Møller EF, Henriksen KV, Markager SS, and Hansen BW (2012) Effect of temperature and food availability on feeding and egg production of Calanus hyperboreus in Disko Bay, Western Greenland. Mar. Ecol. Prog. Ser. 447: 109-126
Heuschele J, and Kiørboe T (2012) The smell of virgins. Mating status of females affects male swimming behaviour in Oithona davisae. J. Plankton Res. 34: 929-935
(Featured article and featured on the cover)
Heuschele J, Salminen T, and Candolin U (2012) Habitat change influences mate search behaviour in three-spined sticklebacks. Animal Behaviour 83:1505–1510
Hirst AG (2012) Intra-specific scaling of mass to length in pelagic animals: Ontogenetic shape change and its implications. Limnol. Oceanogr. 57: 1579-1590
Jaspers C, Haraldson M, Bolte S, Reusch TBH, and Kiørboe T (2012) Ctenophore population recruits entirely through larval reproduction in the central Baltic Sea. Biol. Lett. 8: 809-812
(Featured in Nature as a Research highlight)
Jennings S, Andersen KH, and Blanchard J. Marine Ecology and Fisheries (2012) In: Metabolic ecology: a scaling approach. Editors: Richard M. Sibly, James H. Brown, Astrid Kodric-Brown. John Wiley and Sons
Kjellerup S, Dünweber M, Swalethorp R, Nielsen TG, Møller EF, Markaager S, and Hansen BW (2012) The effect of a future warmer ocean on the co-existing copepods Calanus finmarchicus and C. glacialis. In the Disko bay western Greenland Mar Ecol Prog Ser 447: 87-108
Kjellerup S, and Kiørboe T (2012) Prey detection in a cruising copepod. Biol. Lett. 8: 438-441
(Featured in Science, Science NOW)
Litchman E, Edwards KF, Klausmeier CA, and Thomas MK (2012) Phytoplankton niches, traits and eco-evolutionary responses to global environmental change. Theme section on "Biological responses in an anthropogenically modified ocean". Marine Ecology Progress Series 470: 235-248
Maar M, Møller EF, Gürkan Z, Jónasdóttir SH, and Nielsen TG (2012) Sensitivity of Calanus spp. copepods to environmental changes in the North Sea using life-stage structured models. Progress in Oceanogr. doi: 10.1016/j.pocean.2012.10.004
MacKenzie BR, and Mariani P (2012) Spawning of bluefin tuna in the Black Sea: historical evidence, environmental constraints and population plasticity. PloS ONE 7(7): e39998. doi:10.1371/journal.pone.0039998
Michel C, Bluhm B, Gallucci V, Gaston AJ, Gordillo FLJ, Gradinger R, Hopcroft RR, Jensen N, Mustonen T, Niemi A, and Nielsen TG (2012) Biodiversity of Arctic marine ecosystems and responses to climate change. Biodiversity, 13:3-4, 200-214
Murphy EJ, and others including Hirst AG (2012) Spatial and temporal operation of the Scotia Sea ecosystem. Antarctica: An Extreme Environment in a Changing World, Editors: Rogers, AD, Murphy, EJ, Johnston, NM, Clarke, A et al. John Wiley & Sons (London)
Møller EF, Maar M, Jónasdóttir SH, Nielsen TG, and Tönnesson K (2012) The effect of changes in temperature and food on the development of Calanus finmarchicus and Calanus helgolandicus populations. Limnol Ocenogr 57(1) : 211–220
Reckermann M, Brander K, MacKenzie B, and Omstedt A (eds) 2012. Climate impacts on the Baltic Sea: From science to policy. doi: 10.1007/978-3-642-25728-5
Richardson AJ, Brown CJ, Brander K, Bruno JF, Buckley L, Burrows MT, Duarte CM, Halpern BS, Hoegh-Guldberg O, Holding J, Kappel CV, Kiessling W, Moore PJ, O'Connor MI, Pandolfi JM, Parmesan C, Schoeman DS, Schwing F, Sydeman WJ, and Poloczanska ES (2012). Climate change and marine life. Biology Letters, 8: 907-909, 2012
Sainmont J, Thygesen UH, and Visser A (2012) Diel vertical migration arising in a habitat selection game. Theoretical Ecology 1874-1738. doi: 10.1007/s12080-012-0174-0
Selander E, Fagerberg T, Wohlrab S, and Pavia H (2012) Fight and flight in marine dinoflagellates? -kinetics of simultaneous grazer induced responses in Alexandrium tamarense. Limnology and Oceanography 57:58-64
Teixeiraa IG, Crespoa BG. Nielsen TG, and Figueirasa FG (2012) Role of microzooplankton during a Phaeocystis sp. bloom in the Oosterschelde (SW Netherlands) J. Mar Res 97-106
Visser AW, Mariani P, and Pigolotti S (2012) Adaptive behaviour, tri-trophic food-web stability and damping of chaos. J Roy Soc Interface. doi: 10.1098/rsif.2011.0686
Zhang L, Thygesen UH, Knudsen K, and Andersen KH (2012) Trait diversity promotes stability of community dynamics. Theoretical Ecology. doi: 10.1007/s12080-012-0160-6

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